Hb_006435_020

Information

Type -
Description -
Location Contig6435: 14162-16515
Sequence    

Annotation

kegg
ID rcu:RCOM_1397030
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002520406.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q9LT15
description Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1
trembl
ID B9S337
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1397030 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transport protein 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006435_020 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_000627_060 0.031109063 - - -
3 Hb_007741_060 0.0328183953 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
4 Hb_002093_010 0.0357769787 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
5 Hb_002704_090 0.0476876734 - - cytochrome P450, putative [Ricinus communis]
6 Hb_004567_080 0.0505964996 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
7 Hb_004643_030 0.0506003667 - - conserved hypothetical protein [Ricinus communis]
8 Hb_177343_020 0.0514027133 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
9 Hb_035265_020 0.0561614379 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_007933_010 0.0578218386 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_002276_110 0.0580594147 - - protein binding protein, putative [Ricinus communis]
12 Hb_059280_010 0.05952976 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
13 Hb_000648_090 0.0616683857 - - -
14 Hb_007219_010 0.0635578579 - - -
15 Hb_000853_280 0.0663389667 - - PREDICTED: extensin-like [Jatropha curcas]
16 Hb_002421_170 0.0671102908 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
17 Hb_003120_090 0.0679925412 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
18 Hb_005018_050 0.0742796506 - - PREDICTED: licodione synthase-like [Jatropha curcas]
19 Hb_001511_040 0.0763625474 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
20 Hb_006495_030 0.0780951085 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]

Gene co-expression network

sample Hb_006435_020 Hb_006435_020 Hb_000627_060 Hb_000627_060 Hb_006435_020--Hb_000627_060 Hb_007741_060 Hb_007741_060 Hb_006435_020--Hb_007741_060 Hb_002093_010 Hb_002093_010 Hb_006435_020--Hb_002093_010 Hb_002704_090 Hb_002704_090 Hb_006435_020--Hb_002704_090 Hb_004567_080 Hb_004567_080 Hb_006435_020--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_006435_020--Hb_004643_030 Hb_000627_060--Hb_002093_010 Hb_000627_060--Hb_007741_060 Hb_000627_060--Hb_002704_090 Hb_000627_060--Hb_004567_080 Hb_000627_060--Hb_004643_030 Hb_007741_060--Hb_002093_010 Hb_177343_020 Hb_177343_020 Hb_007741_060--Hb_177343_020 Hb_007741_060--Hb_004643_030 Hb_007741_060--Hb_004567_080 Hb_002093_010--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_002093_010--Hb_007933_010 Hb_003120_090 Hb_003120_090 Hb_002093_010--Hb_003120_090 Hb_002704_090--Hb_003120_090 Hb_005018_050 Hb_005018_050 Hb_002704_090--Hb_005018_050 Hb_002704_090--Hb_007933_010 Hb_031194_030 Hb_031194_030 Hb_002704_090--Hb_031194_030 Hb_004567_080--Hb_004643_030 Hb_004567_080--Hb_177343_020 Hb_035265_020 Hb_035265_020 Hb_004567_080--Hb_035265_020 Hb_002276_110 Hb_002276_110 Hb_004567_080--Hb_002276_110 Hb_000648_090 Hb_000648_090 Hb_004567_080--Hb_000648_090 Hb_004643_030--Hb_177343_020 Hb_004643_030--Hb_035265_020 Hb_004643_030--Hb_002276_110 Hb_004643_030--Hb_000648_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.833212 0.0408666 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0240348 0 0 0 11.8493

CAGE analysis