Hb_007933_010

Information

Type -
Description -
Location Contig7933: 6108-9056
Sequence    

Annotation

kegg
ID rcu:RCOM_0230550
description ATP-binding cassette transporter, putative (EC:3.6.3.30)
nr
ID XP_002527217.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q9M2V6
description ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1
trembl
ID B9SMJ8
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0230550 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007933_010 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_000853_280 0.0114171469 - - PREDICTED: extensin-like [Jatropha curcas]
3 Hb_003120_090 0.0344766382 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
4 Hb_002093_010 0.0349207271 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
5 Hb_002704_090 0.0443319216 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000627_060 0.0481897447 - - -
7 Hb_005018_050 0.0517864627 - - PREDICTED: licodione synthase-like [Jatropha curcas]
8 Hb_007741_060 0.0568402424 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
9 Hb_006435_020 0.0578218386 - - sugar transporter, putative [Ricinus communis]
10 Hb_003407_050 0.0601740055 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
11 Hb_031194_030 0.061234141 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
12 Hb_006495_030 0.0678816696 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
13 Hb_003053_100 0.070298372 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
14 Hb_003053_090 0.0703711612 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
15 Hb_088080_010 0.0712746357 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
16 Hb_015981_010 0.0720747798 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_006040_090 0.0745920211 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
18 Hb_007595_030 0.0775217284 - - psbA gene product (chloroplast) [Silene noctiflora]
19 Hb_020859_010 0.0811469003 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
20 Hb_004643_030 0.0815168578 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007933_010 Hb_007933_010 Hb_000853_280 Hb_000853_280 Hb_007933_010--Hb_000853_280 Hb_003120_090 Hb_003120_090 Hb_007933_010--Hb_003120_090 Hb_002093_010 Hb_002093_010 Hb_007933_010--Hb_002093_010 Hb_002704_090 Hb_002704_090 Hb_007933_010--Hb_002704_090 Hb_000627_060 Hb_000627_060 Hb_007933_010--Hb_000627_060 Hb_005018_050 Hb_005018_050 Hb_007933_010--Hb_005018_050 Hb_000853_280--Hb_003120_090 Hb_000853_280--Hb_002093_010 Hb_000853_280--Hb_002704_090 Hb_000853_280--Hb_005018_050 Hb_000853_280--Hb_000627_060 Hb_003120_090--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_003120_090--Hb_003407_050 Hb_003120_090--Hb_002704_090 Hb_031194_030 Hb_031194_030 Hb_003120_090--Hb_031194_030 Hb_002093_010--Hb_000627_060 Hb_002093_010--Hb_002704_090 Hb_007741_060 Hb_007741_060 Hb_002093_010--Hb_007741_060 Hb_006435_020 Hb_006435_020 Hb_002093_010--Hb_006435_020 Hb_002093_010--Hb_003120_090 Hb_002704_090--Hb_000627_060 Hb_002704_090--Hb_005018_050 Hb_002704_090--Hb_031194_030 Hb_000627_060--Hb_007741_060 Hb_000627_060--Hb_006435_020 Hb_004567_080 Hb_004567_080 Hb_000627_060--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_000627_060--Hb_004643_030 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_031194_030 Hb_088080_010 Hb_088080_010 Hb_005018_050--Hb_088080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0351695 0.00686459 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.477224

CAGE analysis