Hb_088080_010

Information

Type -
Description -
Location Contig88080: 34-2699
Sequence    

Annotation

kegg
ID mtr:MTR_4g051150
description Photosystem I P700 chlorophyll a apoprotein
nr
ID AGW04667.1
description photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
swissprot
ID Q09G46
description Photosystem I P700 chlorophyll a apoprotein A1 OS=Platanus occidentalis GN=psaA PE=3 SV=1
trembl
ID U3MAD4
description Photosystem I P700 chlorophyll a apoprotein A1 OS=Orthosia scoparia GN=psaA PE=3 SV=1
Gene Ontology
ID GO:0009507
description photosystem i p700 apoprotein a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088080_010 0.0 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
2 Hb_007595_030 0.0205330697 - - psbA gene product (chloroplast) [Silene noctiflora]
3 Hb_031194_030 0.0343631226 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
4 Hb_007645_050 0.0374085788 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
5 Hb_003963_030 0.0498829914 - - psbB [Jatropha curcas]
6 Hb_005018_050 0.0541551967 - - PREDICTED: licodione synthase-like [Jatropha curcas]
7 Hb_003120_090 0.0576164889 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
8 Hb_003407_050 0.0590459051 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_002835_420 0.0662206879 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
10 Hb_154980_010 0.0663971295 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
11 Hb_002704_090 0.0698210845 - - cytochrome P450, putative [Ricinus communis]
12 Hb_007933_010 0.0712746357 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_000853_280 0.0742120303 - - PREDICTED: extensin-like [Jatropha curcas]
14 Hb_000938_050 0.0757619793 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
15 Hb_126973_010 0.077212896 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
16 Hb_106850_010 0.0778141558 - - photosystem II protein D2 [Lactuca sativa]
17 Hb_002093_010 0.077901325 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
18 Hb_007645_060 0.0828075208 - - cytochrome f [Hevea brasiliensis]
19 Hb_033623_030 0.0828761986 - - PREDICTED: isoprene synthase, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_159308_010 0.0833269079 - - ribosomal protein S4 [Cercidiphyllum japonicum]

Gene co-expression network

sample Hb_088080_010 Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_088080_010--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_088080_010--Hb_031194_030 Hb_007645_050 Hb_007645_050 Hb_088080_010--Hb_007645_050 Hb_003963_030 Hb_003963_030 Hb_088080_010--Hb_003963_030 Hb_005018_050 Hb_005018_050 Hb_088080_010--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_088080_010--Hb_003120_090 Hb_007595_030--Hb_007645_050 Hb_007595_030--Hb_031194_030 Hb_007595_030--Hb_003963_030 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_031194_030--Hb_005018_050 Hb_031194_030--Hb_003120_090 Hb_031194_030--Hb_003407_050 Hb_002704_090 Hb_002704_090 Hb_031194_030--Hb_002704_090 Hb_007645_050--Hb_003963_030 Hb_007645_050--Hb_031194_030 Hb_007645_060 Hb_007645_060 Hb_007645_050--Hb_007645_060 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010 Hb_003963_030--Hb_154980_010 Hb_003963_030--Hb_031194_030 Hb_002835_420 Hb_002835_420 Hb_003963_030--Hb_002835_420 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_003120_090 Hb_005018_050--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_005018_050--Hb_007933_010 Hb_003120_090--Hb_003407_050 Hb_003120_090--Hb_002704_090 Hb_003120_090--Hb_007933_010 Hb_000853_280 Hb_000853_280 Hb_003120_090--Hb_000853_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268914 0.59955 15.4066 5.74874 0.0941234 0.502816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10062 0.0633386 0.331174 0.239167 320.976

CAGE analysis