Hb_007645_050

Information

Type -
Description -
Location Contig7645: 16088-18470
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00052
description accD; acetyl-CoA carboxylase beta subunit
nr
ID YP_004327671.1
description acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
swissprot
ID Q14FE8
description Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Populus alba GN=accD PE=3 SV=1
trembl
ID F2X0C5
description Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Hevea brasiliensis GN=accD PE=3 SV=1
Gene Ontology
ID GO:0009317
description acetyl- carboxylase carboxyltransferase beta subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57391: 14171-15394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_050 0.0 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
2 Hb_003963_030 0.0338149251 - - psbB [Jatropha curcas]
3 Hb_088080_010 0.0374085788 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
4 Hb_007595_030 0.0383932755 - - psbA gene product (chloroplast) [Silene noctiflora]
5 Hb_031194_030 0.0523733189 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
6 Hb_007645_060 0.0613647508 - - cytochrome f [Hevea brasiliensis]
7 Hb_154980_010 0.0639627708 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
8 Hb_002835_420 0.0651566973 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
9 Hb_005018_050 0.0727410368 - - PREDICTED: licodione synthase-like [Jatropha curcas]
10 Hb_126973_010 0.0736599217 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
11 Hb_106850_010 0.0740736739 - - photosystem II protein D2 [Lactuca sativa]
12 Hb_003407_050 0.0750698997 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_003120_090 0.078850654 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
14 Hb_149598_010 0.0793041466 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
15 Hb_145745_030 0.0811453585 - - BnaC09g26890D [Brassica napus]
16 Hb_151890_020 0.0857821248 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
17 Hb_002704_090 0.0875058074 - - cytochrome P450, putative [Ricinus communis]
18 Hb_003688_030 0.0875607457 - - NADH dehydrogenase 2-like ORF 180
19 Hb_009193_050 0.0880683673 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
20 Hb_000938_050 0.0884988076 - - hypothetical protein JCGZ_09640 [Jatropha curcas]

Gene co-expression network

sample Hb_007645_050 Hb_007645_050 Hb_003963_030 Hb_003963_030 Hb_007645_050--Hb_003963_030 Hb_088080_010 Hb_088080_010 Hb_007645_050--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_007645_050--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_007645_050--Hb_031194_030 Hb_007645_060 Hb_007645_060 Hb_007645_050--Hb_007645_060 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010 Hb_003963_030--Hb_088080_010 Hb_003963_030--Hb_007595_030 Hb_003963_030--Hb_154980_010 Hb_003963_030--Hb_031194_030 Hb_002835_420 Hb_002835_420 Hb_003963_030--Hb_002835_420 Hb_088080_010--Hb_007595_030 Hb_088080_010--Hb_031194_030 Hb_005018_050 Hb_005018_050 Hb_088080_010--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_088080_010--Hb_003120_090 Hb_007595_030--Hb_031194_030 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_031194_030--Hb_005018_050 Hb_031194_030--Hb_003120_090 Hb_031194_030--Hb_003407_050 Hb_002704_090 Hb_002704_090 Hb_031194_030--Hb_002704_090 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170 Hb_154980_010--Hb_002835_420 Hb_106850_010 Hb_106850_010 Hb_154980_010--Hb_106850_010 Hb_104509_010 Hb_104509_010 Hb_154980_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_154980_010--Hb_006302_050 Hb_126973_010 Hb_126973_010 Hb_154980_010--Hb_126973_010 Hb_154980_010--Hb_031194_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.346209 0.490667 6.62316 2.90824 0.246591 0.697778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.031965 0 0.0944199 0.100407 169.101

CAGE analysis