Hb_149598_010

Information

Type -
Description -
Location Contig149598: 35-801
Sequence    

Annotation

kegg
ID mtr:MTR_7g021710
description NAD(P)H-quinone oxidoreductase subunit 6
nr
ID XP_003604160.1
description NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
swissprot
ID B1NWK1
description NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Manihot esculenta GN=ndhE PE=3 SV=1
trembl
ID G7KTU2
description NADH-ubiquinone/plastoquinone oxidoreductase chain 6 OS=Medicago truncatula GN=MTR_7g021710 PE=3 SV=1
Gene Ontology
ID GO:0016651
description nadh-plastoquinone oxidoreductase subunit 4l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149598_010 0.0 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
2 Hb_007645_060 0.06914476 - - cytochrome f [Hevea brasiliensis]
3 Hb_007645_050 0.0793041466 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
4 Hb_007595_030 0.090530026 - - psbA gene product (chloroplast) [Silene noctiflora]
5 Hb_088080_010 0.0916140435 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
6 Hb_001338_170 0.0922528435 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
7 Hb_159308_010 0.0924742602 - - ribosomal protein S4 [Cercidiphyllum japonicum]
8 Hb_031194_030 0.0971187719 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
9 Hb_004811_010 0.0973972802 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
10 Hb_003963_030 0.1016562017 - - psbB [Jatropha curcas]
11 Hb_088080_040 0.1021401024 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
12 Hb_179142_010 0.1038435372 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
13 Hb_002704_090 0.1077900539 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002093_010 0.1083343799 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
15 Hb_033623_030 0.1088827512 - - PREDICTED: isoprene synthase, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_003053_100 0.1092154359 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
17 Hb_000627_200 0.1099362838 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
18 Hb_002835_420 0.1100551662 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
19 Hb_126973_010 0.1103349098 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
20 Hb_000627_060 0.1105731534 - - -

Gene co-expression network

sample Hb_149598_010 Hb_149598_010 Hb_007645_060 Hb_007645_060 Hb_149598_010--Hb_007645_060 Hb_007645_050 Hb_007645_050 Hb_149598_010--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_149598_010--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_149598_010--Hb_088080_010 Hb_001338_170 Hb_001338_170 Hb_149598_010--Hb_001338_170 Hb_159308_010 Hb_159308_010 Hb_149598_010--Hb_159308_010 Hb_007645_060--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_007645_060--Hb_001338_170 Hb_007645_050--Hb_003963_030 Hb_007645_050--Hb_088080_010 Hb_007645_050--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_007645_050--Hb_031194_030 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010 Hb_007595_030--Hb_088080_010 Hb_007595_030--Hb_031194_030 Hb_007595_030--Hb_003963_030 Hb_005018_050 Hb_005018_050 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_088080_010--Hb_031194_030 Hb_088080_010--Hb_003963_030 Hb_088080_010--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_088080_010--Hb_003120_090 Hb_001338_170--Hb_007645_050 Hb_001338_170--Hb_159308_010 Hb_088080_040 Hb_088080_040 Hb_001338_170--Hb_088080_040 Hb_001338_170--Hb_000627_200 Hb_159308_010--Hb_088080_010 Hb_159308_010--Hb_007595_030 Hb_159308_010--Hb_007645_060 Hb_159308_010--Hb_007645_050 Hb_006040_090 Hb_006040_090 Hb_159308_010--Hb_006040_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.336052 2.45783 0.319925 0.144332 0.531021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.055832 42.8081

CAGE analysis