Hb_088080_040

Information

Type -
Description -
Location Contig88080: 6755-8438
Sequence    

Annotation

kegg
ID cam:101508960
description NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic-like
nr
ID XP_003599578.1
description NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
swissprot
ID P0CC91
description NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Manihot esculenta GN=ndhB2 PE=3 SV=1
trembl
ID G7J101
description Ribosomal protein S7 OS=Medicago truncatula GN=MTR_3g035660 PE=3 SV=1
Gene Ontology
ID GO:0005886
description nadh dehydrogenase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088080_040 0.0 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
2 Hb_031194_010 0.0759073443 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
3 Hb_004811_010 0.0856734101 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
4 Hb_007645_060 0.0896923335 - - cytochrome f [Hevea brasiliensis]
5 Hb_003693_060 0.0901350547 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
6 Hb_001338_170 0.0945791829 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
7 Hb_179142_010 0.097897352 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
8 Hb_149598_010 0.1021401024 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
9 Hb_027638_010 0.1036716282 - - Protein KES1, putative [Ricinus communis]
10 Hb_009193_050 0.1169059368 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
11 Hb_000627_200 0.1192623659 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
12 Hb_103465_010 0.1208846783 - - RNA polymerase beta subunit [Hevea brasiliensis]
13 Hb_007645_050 0.1233952969 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
14 Hb_151890_020 0.1244234665 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
15 Hb_182972_020 0.1245239032 - - cytochrome b6 [Gossypium barbadense]
16 Hb_001645_020 0.1267790255 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
17 Hb_000156_240 0.127180032 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
18 Hb_019253_040 0.130463539 - - conserved hypothetical protein [Ricinus communis]
19 Hb_051924_010 0.1313592271 - - BnaA01g34100D [Brassica napus]
20 Hb_003963_030 0.1378995438 - - psbB [Jatropha curcas]

Gene co-expression network

sample Hb_088080_040 Hb_088080_040 Hb_031194_010 Hb_031194_010 Hb_088080_040--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_088080_040--Hb_004811_010 Hb_007645_060 Hb_007645_060 Hb_088080_040--Hb_007645_060 Hb_003693_060 Hb_003693_060 Hb_088080_040--Hb_003693_060 Hb_001338_170 Hb_001338_170 Hb_088080_040--Hb_001338_170 Hb_179142_010 Hb_179142_010 Hb_088080_040--Hb_179142_010 Hb_031194_010--Hb_003693_060 Hb_031194_010--Hb_004811_010 Hb_000156_240 Hb_000156_240 Hb_031194_010--Hb_000156_240 Hb_031194_010--Hb_007645_060 Hb_031194_010--Hb_001338_170 Hb_004811_010--Hb_007645_060 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020 Hb_007645_050 Hb_007645_050 Hb_007645_060--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_007645_060--Hb_001338_170 Hb_103465_010 Hb_103465_010 Hb_003693_060--Hb_103465_010 Hb_003693_060--Hb_004811_010 Hb_003693_060--Hb_000156_240 Hb_003963_040 Hb_003963_040 Hb_003693_060--Hb_003963_040 Hb_001338_170--Hb_149598_010 Hb_001338_170--Hb_007645_050 Hb_159308_010 Hb_159308_010 Hb_001338_170--Hb_159308_010 Hb_001338_170--Hb_000627_200 Hb_179142_010--Hb_007645_060 Hb_179142_010--Hb_000627_200 Hb_179142_010--Hb_149598_010 Hb_179142_010--Hb_004811_010 Hb_179142_010--Hb_182972_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.452302 0.34978 1.83628 0.230956 0.251506 0.277519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0496298 24.8517

CAGE analysis