Hb_179142_010

Information

Type -
Description -
Location Contig179142: 324-1226
Sequence    

Annotation

kegg
ID pop:Poptr_cp094
description ndhB; NADH dehydrogenase subunit 2 (EC:1.6.5.3)
nr
ID BAC77586.1
description NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
swissprot
ID P0CC65
description NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Gossypium barbadense GN=ndhB2 PE=3 SV=1
trembl
ID Q7YJ10
description NADH dehydrogenase ND 2 subunit (Fragment) OS=Nicotiana tomentosiformis GN=ndhB PE=4 SV=1
Gene Ontology
ID GO:0005739
description nadh dehydrogenase subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179142_010 0.0 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
2 Hb_007645_060 0.0962291498 - - cytochrome f [Hevea brasiliensis]
3 Hb_088080_040 0.097897352 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
4 Hb_000627_200 0.103839548 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
5 Hb_149598_010 0.1038435372 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
6 Hb_004811_010 0.108421172 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
7 Hb_182972_020 0.1084330745 - - cytochrome b6 [Gossypium barbadense]
8 Hb_051924_010 0.1141237107 - - BnaA01g34100D [Brassica napus]
9 Hb_151890_020 0.1212439145 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
10 Hb_019253_040 0.1234147795 - - conserved hypothetical protein [Ricinus communis]
11 Hb_077242_020 0.1245764409 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
12 Hb_031194_010 0.1253471511 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
13 Hb_001338_170 0.1275522619 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
14 Hb_007645_050 0.130260293 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
15 Hb_103465_010 0.1323628811 - - RNA polymerase beta subunit [Hevea brasiliensis]
16 Hb_001645_020 0.1328773876 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
17 Hb_034168_070 0.1388184602 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
18 Hb_003963_030 0.1396471578 - - psbB [Jatropha curcas]
19 Hb_000156_240 0.1401826977 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
20 Hb_001083_040 0.141168258 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]

Gene co-expression network

sample Hb_179142_010 Hb_179142_010 Hb_007645_060 Hb_007645_060 Hb_179142_010--Hb_007645_060 Hb_088080_040 Hb_088080_040 Hb_179142_010--Hb_088080_040 Hb_000627_200 Hb_000627_200 Hb_179142_010--Hb_000627_200 Hb_149598_010 Hb_149598_010 Hb_179142_010--Hb_149598_010 Hb_004811_010 Hb_004811_010 Hb_179142_010--Hb_004811_010 Hb_182972_020 Hb_182972_020 Hb_179142_010--Hb_182972_020 Hb_007645_050 Hb_007645_050 Hb_007645_060--Hb_007645_050 Hb_007645_060--Hb_182972_020 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170 Hb_031194_010 Hb_031194_010 Hb_088080_040--Hb_031194_010 Hb_088080_040--Hb_004811_010 Hb_088080_040--Hb_007645_060 Hb_003693_060 Hb_003693_060 Hb_088080_040--Hb_003693_060 Hb_088080_040--Hb_001338_170 Hb_000627_200--Hb_182972_020 Hb_001645_020 Hb_001645_020 Hb_000627_200--Hb_001645_020 Hb_000627_200--Hb_001338_170 Hb_051924_010 Hb_051924_010 Hb_000627_200--Hb_051924_010 Hb_003693_030 Hb_003693_030 Hb_000627_200--Hb_003693_030 Hb_149598_010--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_149598_010--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_149598_010--Hb_088080_010 Hb_149598_010--Hb_001338_170 Hb_159308_010 Hb_159308_010 Hb_149598_010--Hb_159308_010 Hb_004811_010--Hb_007645_060 Hb_004811_010--Hb_031194_010 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020 Hb_182972_020--Hb_001645_020 Hb_182972_020--Hb_151890_020 Hb_182972_020--Hb_051924_010 Hb_182972_020--Hb_007645_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.237751 0.717841 2.46873 0.256206 0.653368 0.8501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.520928 0.0847273 46.9619

CAGE analysis