Hb_051924_010

Information

Type -
Description -
Location Contig51924: 1500-2156
Sequence    

Annotation

kegg
ID mtr:MTR_4g034730
description 50S ribosomal protein L2-B
nr
ID CDY21179.1
description BnaA01g34100D [Brassica napus]
swissprot
ID B1NWJ1
description 50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1
trembl
ID A0A078G6Z6
description BnaA01g34100D protein OS=Brassica napus GN=BnaA01g34100D PE=3 SV=1
Gene Ontology
ID GO:0015934
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051924_010 0.0 - - BnaA01g34100D [Brassica napus]
2 Hb_182972_020 0.0953335831 - - cytochrome b6 [Gossypium barbadense]
3 Hb_000627_200 0.1005302253 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
4 Hb_001338_080 0.1035055299 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
5 Hb_007645_060 0.1065264168 - - cytochrome f [Hevea brasiliensis]
6 Hb_003693_030 0.1087552142 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
7 Hb_019253_040 0.1130703755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_179142_010 0.1141237107 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
9 Hb_151890_020 0.1162210637 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
10 Hb_031194_010 0.1209563401 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
11 Hb_000156_240 0.1226531067 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
12 Hb_004811_010 0.1228204939 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
13 Hb_001674_050 0.1251674344 - - cytochrome b6 (chloroplast) [Apios americana]
14 Hb_001645_020 0.1272055473 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
15 Hb_159305_010 0.1278204805 - - rpl2 [Jatropha curcas]
16 Hb_001338_170 0.1295538064 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
17 Hb_088080_040 0.1313592271 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
18 Hb_003963_030 0.1382455213 - - psbB [Jatropha curcas]
19 Hb_103465_010 0.1412524756 - - RNA polymerase beta subunit [Hevea brasiliensis]
20 Hb_007645_050 0.1417780021 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_051924_010 Hb_051924_010 Hb_182972_020 Hb_182972_020 Hb_051924_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_051924_010--Hb_000627_200 Hb_001338_080 Hb_001338_080 Hb_051924_010--Hb_001338_080 Hb_007645_060 Hb_007645_060 Hb_051924_010--Hb_007645_060 Hb_003693_030 Hb_003693_030 Hb_051924_010--Hb_003693_030 Hb_019253_040 Hb_019253_040 Hb_051924_010--Hb_019253_040 Hb_182972_020--Hb_000627_200 Hb_182972_020--Hb_007645_060 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_151890_020 Hb_151890_020 Hb_182972_020--Hb_151890_020 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_000627_200--Hb_007645_060 Hb_000627_200--Hb_001645_020 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_000627_200--Hb_003693_030 Hb_141708_010 Hb_141708_010 Hb_001338_080--Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_001338_080--Hb_001674_050 Hb_001338_080--Hb_182972_020 Hb_001338_080--Hb_019253_040 Hb_001338_080--Hb_007645_060 Hb_007645_060--Hb_007645_050 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_007645_060--Hb_001338_170 Hb_003693_030--Hb_182972_020 Hb_001338_150 Hb_001338_150 Hb_003693_030--Hb_001338_150 Hb_003693_030--Hb_001645_020 Hb_003693_030--Hb_001338_080 Hb_019253_040--Hb_007645_060 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_019253_040--Hb_151890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9356 0.355728 6.00082 2.17918 0.592801 2.61519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577929 0.27247 1.87925 0.187329 109.728

CAGE analysis