Hb_001338_080

Information

Type -
Description -
Location Contig1338: 109927-117331
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00125
description ndhB; NADH dehydrogenase subunit 2
nr
ID YP_009127898.1
description NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
swissprot
ID P0CC65
description NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Gossypium barbadense GN=ndhB2 PE=3 SV=1
trembl
ID A0A0C4KSC4
description NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Tamarindus indica GN=ndhB PE=3 SV=1
Gene Ontology
ID GO:0015935
description nadh-plastoquinone oxidoreductase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09522: 109899-117724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_080 0.0 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
2 Hb_141708_010 0.0989921974 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
3 Hb_001674_050 0.1020595959 - - cytochrome b6 (chloroplast) [Apios americana]
4 Hb_051924_010 0.1035055299 - - BnaA01g34100D [Brassica napus]
5 Hb_182972_020 0.1141203194 - - cytochrome b6 [Gossypium barbadense]
6 Hb_019253_040 0.1186717922 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007645_060 0.1204252971 - - cytochrome f [Hevea brasiliensis]
8 Hb_000156_240 0.122642657 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
9 Hb_001610_100 0.1257451 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_003693_030 0.1260190787 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
11 Hb_151890_020 0.1260216712 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
12 Hb_000627_200 0.1267313125 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
13 Hb_004542_030 0.1271399599 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
14 Hb_063885_010 0.1294645091 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
15 Hb_062192_030 0.1304517851 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
16 Hb_000648_150 0.1329149754 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
17 Hb_189099_020 0.1336179153 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
18 Hb_000920_020 0.1346147256 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
19 Hb_159308_010 0.1365827075 - - ribosomal protein S4 [Cercidiphyllum japonicum]
20 Hb_000336_130 0.1366802793 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001338_080 Hb_001338_080 Hb_141708_010 Hb_141708_010 Hb_001338_080--Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_001338_080--Hb_001674_050 Hb_051924_010 Hb_051924_010 Hb_001338_080--Hb_051924_010 Hb_182972_020 Hb_182972_020 Hb_001338_080--Hb_182972_020 Hb_019253_040 Hb_019253_040 Hb_001338_080--Hb_019253_040 Hb_007645_060 Hb_007645_060 Hb_001338_080--Hb_007645_060 Hb_141708_010--Hb_001674_050 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_063885_010 Hb_063885_010 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010 Hb_001674_050--Hb_063885_010 Hb_001674_050--Hb_182972_020 Hb_001083_040 Hb_001083_040 Hb_001674_050--Hb_001083_040 Hb_151890_020 Hb_151890_020 Hb_001674_050--Hb_151890_020 Hb_051924_010--Hb_182972_020 Hb_051924_010--Hb_000627_200 Hb_051924_010--Hb_007645_060 Hb_003693_030 Hb_003693_030 Hb_051924_010--Hb_003693_030 Hb_051924_010--Hb_019253_040 Hb_182972_020--Hb_000627_200 Hb_182972_020--Hb_007645_060 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_182972_020--Hb_151890_020 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_019253_040--Hb_007645_060 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_019253_040--Hb_151890_020 Hb_007645_060--Hb_007645_050 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103513 0.0673355 0.664313 0.565262 0.0403624 0.316538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0370924 0.0291872 0.111178 0.208696 11.6516

CAGE analysis