Hb_007645_060

Information

Type -
Description -
Location Contig7645: 19898-20478
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00056
description petA; cytochrome f
nr
ID YP_004327675.1
description cytochrome f [Hevea brasiliensis]
swissprot
ID B1NWG3
description Cytochrome f OS=Manihot esculenta GN=petA PE=3 SV=1
trembl
ID F2X0C9
description Cytochrome f OS=Hevea brasiliensis GN=petA PE=3 SV=1
Gene Ontology
ID GO:0005739
description cytochrome f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_060 0.0 - - cytochrome f [Hevea brasiliensis]
2 Hb_007645_050 0.0613647508 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
3 Hb_182972_020 0.0680202784 - - cytochrome b6 [Gossypium barbadense]
4 Hb_149598_010 0.06914476 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
5 Hb_003963_030 0.0709836622 - - psbB [Jatropha curcas]
6 Hb_000627_200 0.0721789276 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
7 Hb_001338_170 0.075524053 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
8 Hb_151890_020 0.0793870626 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
9 Hb_088080_010 0.0828075208 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
10 Hb_004811_010 0.0837830559 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
11 Hb_007595_030 0.0841511813 - - psbA gene product (chloroplast) [Silene noctiflora]
12 Hb_159308_010 0.0887804769 - - ribosomal protein S4 [Cercidiphyllum japonicum]
13 Hb_088080_040 0.0896923335 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
14 Hb_179142_010 0.0962291498 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
15 Hb_019253_040 0.0962669231 - - conserved hypothetical protein [Ricinus communis]
16 Hb_145745_030 0.0974478151 - - BnaC09g26890D [Brassica napus]
17 Hb_031194_030 0.1031840655 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
18 Hb_031194_010 0.104692523 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
19 Hb_001645_020 0.1047084793 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
20 Hb_051924_010 0.1065264168 - - BnaA01g34100D [Brassica napus]

Gene co-expression network

sample Hb_007645_060 Hb_007645_060 Hb_007645_050 Hb_007645_050 Hb_007645_060--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170 Hb_007645_050--Hb_003963_030 Hb_088080_010 Hb_088080_010 Hb_007645_050--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_007645_050--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_007645_050--Hb_031194_030 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010 Hb_182972_020--Hb_000627_200 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_151890_020 Hb_151890_020 Hb_182972_020--Hb_151890_020 Hb_051924_010 Hb_051924_010 Hb_182972_020--Hb_051924_010 Hb_182972_020--Hb_007645_050 Hb_149598_010--Hb_007645_050 Hb_149598_010--Hb_007595_030 Hb_149598_010--Hb_088080_010 Hb_149598_010--Hb_001338_170 Hb_159308_010 Hb_159308_010 Hb_149598_010--Hb_159308_010 Hb_003963_030--Hb_088080_010 Hb_003963_030--Hb_007595_030 Hb_003963_030--Hb_154980_010 Hb_003963_030--Hb_031194_030 Hb_002835_420 Hb_002835_420 Hb_003963_030--Hb_002835_420 Hb_000627_200--Hb_001645_020 Hb_000627_200--Hb_001338_170 Hb_000627_200--Hb_051924_010 Hb_003693_030 Hb_003693_030 Hb_000627_200--Hb_003693_030 Hb_001338_170--Hb_007645_050 Hb_001338_170--Hb_159308_010 Hb_088080_040 Hb_088080_040 Hb_001338_170--Hb_088080_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.746148 1.00163 8.72046 3.15884 0.883181 2.34424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116577 0.0916014 0.157795 0.340217 176.991

CAGE analysis