Hb_001338_170

Information

Type -
Description -
Location Contig1338: 143238-143846
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00106
description ndhD; NADH dehydrogenase subunit 4
nr
ID YP_004327711.1
description NADH dehydrogenase subunit 4 [Hevea brasiliensis]
swissprot
ID B1NWJ9
description NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Manihot esculenta GN=ndhD PE=3 SV=1
trembl
ID F2X0G5
description NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Hevea brasiliensis GN=ndhD PE=3 SV=1
Gene Ontology
ID GO:0008137
description nadh dehydrogenase subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_170 0.0 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
2 Hb_007645_060 0.075524053 - - cytochrome f [Hevea brasiliensis]
3 Hb_149598_010 0.0922528435 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
4 Hb_007645_050 0.0925546556 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
5 Hb_159308_010 0.092796737 - - ribosomal protein S4 [Cercidiphyllum japonicum]
6 Hb_088080_040 0.0945791829 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
7 Hb_000627_200 0.1000505831 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
8 Hb_088080_010 0.1051307663 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
9 Hb_009193_050 0.1061918727 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
10 Hb_031194_010 0.1073280656 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
11 Hb_007595_030 0.108974333 - - psbA gene product (chloroplast) [Silene noctiflora]
12 Hb_182972_020 0.1102611611 - - cytochrome b6 [Gossypium barbadense]
13 Hb_004811_010 0.1106574857 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
14 Hb_003963_030 0.1118486051 - - psbB [Jatropha curcas]
15 Hb_027638_010 0.1120174622 - - Protein KES1, putative [Ricinus communis]
16 Hb_145745_030 0.1132365973 - - BnaC09g26890D [Brassica napus]
17 Hb_151890_020 0.1157103071 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
18 Hb_006040_090 0.1163245247 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
19 Hb_031194_030 0.1172609889 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
20 Hb_000648_150 0.1201662901 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]

Gene co-expression network

sample Hb_001338_170 Hb_001338_170 Hb_007645_060 Hb_007645_060 Hb_001338_170--Hb_007645_060 Hb_149598_010 Hb_149598_010 Hb_001338_170--Hb_149598_010 Hb_007645_050 Hb_007645_050 Hb_001338_170--Hb_007645_050 Hb_159308_010 Hb_159308_010 Hb_001338_170--Hb_159308_010 Hb_088080_040 Hb_088080_040 Hb_001338_170--Hb_088080_040 Hb_000627_200 Hb_000627_200 Hb_001338_170--Hb_000627_200 Hb_007645_060--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_007645_060--Hb_182972_020 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_007645_060--Hb_000627_200 Hb_149598_010--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_149598_010--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_149598_010--Hb_088080_010 Hb_149598_010--Hb_159308_010 Hb_007645_050--Hb_003963_030 Hb_007645_050--Hb_088080_010 Hb_007645_050--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_007645_050--Hb_031194_030 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010 Hb_159308_010--Hb_088080_010 Hb_159308_010--Hb_007595_030 Hb_159308_010--Hb_007645_060 Hb_159308_010--Hb_007645_050 Hb_006040_090 Hb_006040_090 Hb_159308_010--Hb_006040_090 Hb_031194_010 Hb_031194_010 Hb_088080_040--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_088080_040--Hb_004811_010 Hb_088080_040--Hb_007645_060 Hb_003693_060 Hb_003693_060 Hb_088080_040--Hb_003693_060 Hb_179142_010 Hb_179142_010 Hb_088080_040--Hb_179142_010 Hb_000627_200--Hb_182972_020 Hb_001645_020 Hb_001645_020 Hb_000627_200--Hb_001645_020 Hb_051924_010 Hb_051924_010 Hb_000627_200--Hb_051924_010 Hb_003693_030 Hb_003693_030 Hb_000627_200--Hb_003693_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.36606 0.421892 2.8176 0.931045 0 0.749489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 43.6026

CAGE analysis