Hb_000627_200

Information

Type -
Description -
Location Contig627: 182046-182561
Sequence    

Annotation

kegg
ID pmum:18668095
description ndhI, CP95_p011; NADH-plastoquinone oxidoreductase subunit I
nr
ID YP_004327715.1
description NADH dehydrogenase subunit I [Hevea brasiliensis]
swissprot
ID A4QLG3
description NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Lepidium virginicum GN=ndhI PE=3 SV=1
trembl
ID F2X0G9
description NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Hevea brasiliensis GN=ndhI PE=3 SV=1
Gene Ontology
ID GO:0005886
description nadh dehydrogenase subunit i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_200 0.0 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
2 Hb_182972_020 0.0509759509 - - cytochrome b6 [Gossypium barbadense]
3 Hb_007645_060 0.0721789276 - - cytochrome f [Hevea brasiliensis]
4 Hb_001645_020 0.0860832581 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
5 Hb_001338_170 0.1000505831 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
6 Hb_051924_010 0.1005302253 - - BnaA01g34100D [Brassica napus]
7 Hb_003693_030 0.1011511277 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
8 Hb_179142_010 0.103839548 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
9 Hb_145745_030 0.1054180595 - - BnaC09g26890D [Brassica napus]
10 Hb_007645_050 0.106671104 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
11 Hb_149598_010 0.1099362838 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
12 Hb_003693_040 0.1120808337 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
13 Hb_000648_150 0.1129610686 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
14 Hb_151890_020 0.1137604636 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
15 Hb_003963_030 0.114083009 - - psbB [Jatropha curcas]
16 Hb_088080_040 0.1192623659 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
17 Hb_031194_010 0.1227677228 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
18 Hb_001674_050 0.1238123283 - - cytochrome b6 (chloroplast) [Apios americana]
19 Hb_001338_080 0.1267313125 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
20 Hb_004811_010 0.1271239796 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]

Gene co-expression network

sample Hb_000627_200 Hb_000627_200 Hb_182972_020 Hb_182972_020 Hb_000627_200--Hb_182972_020 Hb_007645_060 Hb_007645_060 Hb_000627_200--Hb_007645_060 Hb_001645_020 Hb_001645_020 Hb_000627_200--Hb_001645_020 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_051924_010 Hb_051924_010 Hb_000627_200--Hb_051924_010 Hb_003693_030 Hb_003693_030 Hb_000627_200--Hb_003693_030 Hb_182972_020--Hb_007645_060 Hb_182972_020--Hb_001645_020 Hb_151890_020 Hb_151890_020 Hb_182972_020--Hb_151890_020 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_007645_060--Hb_007645_050 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_007645_060--Hb_001338_170 Hb_001645_020--Hb_007645_060 Hb_031194_010 Hb_031194_010 Hb_001645_020--Hb_031194_010 Hb_001645_020--Hb_003693_030 Hb_004811_010 Hb_004811_010 Hb_001645_020--Hb_004811_010 Hb_001338_170--Hb_149598_010 Hb_001338_170--Hb_007645_050 Hb_159308_010 Hb_159308_010 Hb_001338_170--Hb_159308_010 Hb_088080_040 Hb_088080_040 Hb_001338_170--Hb_088080_040 Hb_001338_080 Hb_001338_080 Hb_051924_010--Hb_001338_080 Hb_051924_010--Hb_007645_060 Hb_051924_010--Hb_003693_030 Hb_019253_040 Hb_019253_040 Hb_051924_010--Hb_019253_040 Hb_003693_030--Hb_182972_020 Hb_001338_150 Hb_001338_150 Hb_003693_030--Hb_001338_150 Hb_003693_030--Hb_001338_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.954894 0.328728 4.96046 2.40599 0.90898 4.31846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.341568 0.083057 129.354

CAGE analysis