Hb_182972_020

Information

Type -
Description -
Location Contig182972: 453-4213
Sequence    

Annotation

kegg
ID vvi:4025129
description petB, ViviCp052; cytochrome b6
nr
ID YP_913217.1
description cytochrome b6 [Gossypium barbadense]
swissprot
ID Q2L933
description Cytochrome b6 OS=Gossypium hirsutum GN=petB PE=3 SV=2
trembl
ID V9P7W8
description Cytochrome b6 OS=Viviania marifolia GN=petB PE=3 SV=1
Gene Ontology
ID GO:0016020
description cytochrome b6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182972_020 0.0 - - cytochrome b6 [Gossypium barbadense]
2 Hb_000627_200 0.0509759509 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
3 Hb_007645_060 0.0680202784 - - cytochrome f [Hevea brasiliensis]
4 Hb_001645_020 0.0733750755 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
5 Hb_151890_020 0.0870673602 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
6 Hb_051924_010 0.0953335831 - - BnaA01g34100D [Brassica napus]
7 Hb_007645_050 0.1051691363 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
8 Hb_019253_040 0.1056695409 - - conserved hypothetical protein [Ricinus communis]
9 Hb_179142_010 0.1084330745 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
10 Hb_003963_030 0.1091472667 - - psbB [Jatropha curcas]
11 Hb_003693_030 0.1096225768 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
12 Hb_001338_170 0.1102611611 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
13 Hb_004811_010 0.1115161505 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
14 Hb_149598_010 0.1134002507 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
15 Hb_001338_080 0.1141203194 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
16 Hb_001674_050 0.1144705483 - - cytochrome b6 (chloroplast) [Apios americana]
17 Hb_000648_150 0.1154495517 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
18 Hb_145745_030 0.1176388493 - - BnaC09g26890D [Brassica napus]
19 Hb_031194_010 0.1216413875 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
20 Hb_088080_010 0.1222388449 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]

Gene co-expression network

sample Hb_182972_020 Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_182972_020--Hb_000627_200 Hb_007645_060 Hb_007645_060 Hb_182972_020--Hb_007645_060 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_151890_020 Hb_151890_020 Hb_182972_020--Hb_151890_020 Hb_051924_010 Hb_051924_010 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_000627_200--Hb_007645_060 Hb_000627_200--Hb_001645_020 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_000627_200--Hb_051924_010 Hb_003693_030 Hb_003693_030 Hb_000627_200--Hb_003693_030 Hb_007645_060--Hb_007645_050 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_007645_060--Hb_001338_170 Hb_001645_020--Hb_007645_060 Hb_031194_010 Hb_031194_010 Hb_001645_020--Hb_031194_010 Hb_001645_020--Hb_003693_030 Hb_004811_010 Hb_004811_010 Hb_001645_020--Hb_004811_010 Hb_151890_020--Hb_007645_060 Hb_151890_020--Hb_003963_030 Hb_151890_020--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_151890_020--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_151890_020--Hb_088080_010 Hb_001338_080 Hb_001338_080 Hb_051924_010--Hb_001338_080 Hb_051924_010--Hb_007645_060 Hb_051924_010--Hb_003693_030 Hb_019253_040 Hb_019253_040 Hb_051924_010--Hb_019253_040 Hb_007645_050--Hb_003963_030 Hb_007645_050--Hb_088080_010 Hb_007645_050--Hb_007595_030 Hb_031194_030 Hb_031194_030 Hb_007645_050--Hb_031194_030 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303569 0.082377 2.95425 1.58964 0.698403 1.59732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.144686 0.234475 0.0615318 63.927

CAGE analysis