Hb_151890_020

Information

Type -
Description -
Location Contig151890: 4099-4857
Sequence    

Annotation

kegg
ID tcc:ThcaC_p047
description psbB; photosystem II CP47 chlorophyll apoprotein
nr
ID ADM63437.1
description photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
swissprot
ID B1NWH6
description Photosystem II CP47 reaction center protein OS=Manihot esculenta GN=psbB PE=3 SV=1
trembl
ID E0XDY5
description Photosystem II cp47 protein (Fragment) OS=Pentaphragma sp. Duangjai 49 GN=psbB PE=4 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii cp47 partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151890_020 0.0 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
2 Hb_007645_060 0.0793870626 - - cytochrome f [Hevea brasiliensis]
3 Hb_003963_030 0.0846647796 - - psbB [Jatropha curcas]
4 Hb_007645_050 0.0857821248 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
5 Hb_182972_020 0.0870673602 - - cytochrome b6 [Gossypium barbadense]
6 Hb_007595_030 0.0905018777 - - psbA gene product (chloroplast) [Silene noctiflora]
7 Hb_088080_010 0.0926967088 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
8 Hb_063885_010 0.1027929556 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_004811_010 0.1029708714 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
10 Hb_019253_040 0.1132394489 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007044_030 0.1132621488 - - Os06g0273400 [Oryza sativa Japonica Group]
12 Hb_000627_200 0.1137604636 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
13 Hb_031194_030 0.1149731572 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
14 Hb_001338_170 0.1157103071 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
15 Hb_077242_020 0.1159184026 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
16 Hb_051924_010 0.1162210637 - - BnaA01g34100D [Brassica napus]
17 Hb_034168_060 0.1169320982 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
18 Hb_159308_010 0.1183719462 - - ribosomal protein S4 [Cercidiphyllum japonicum]
19 Hb_000156_240 0.1204241727 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
20 Hb_179142_010 0.1212439145 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_151890_020 Hb_151890_020 Hb_007645_060 Hb_007645_060 Hb_151890_020--Hb_007645_060 Hb_003963_030 Hb_003963_030 Hb_151890_020--Hb_003963_030 Hb_007645_050 Hb_007645_050 Hb_151890_020--Hb_007645_050 Hb_182972_020 Hb_182972_020 Hb_151890_020--Hb_182972_020 Hb_007595_030 Hb_007595_030 Hb_151890_020--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_151890_020--Hb_088080_010 Hb_007645_060--Hb_007645_050 Hb_007645_060--Hb_182972_020 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170 Hb_003963_030--Hb_007645_050 Hb_003963_030--Hb_088080_010 Hb_003963_030--Hb_007595_030 Hb_154980_010 Hb_154980_010 Hb_003963_030--Hb_154980_010 Hb_031194_030 Hb_031194_030 Hb_003963_030--Hb_031194_030 Hb_002835_420 Hb_002835_420 Hb_003963_030--Hb_002835_420 Hb_007645_050--Hb_088080_010 Hb_007645_050--Hb_007595_030 Hb_007645_050--Hb_031194_030 Hb_007645_050--Hb_154980_010 Hb_182972_020--Hb_000627_200 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_051924_010 Hb_051924_010 Hb_182972_020--Hb_051924_010 Hb_182972_020--Hb_007645_050 Hb_007595_030--Hb_088080_010 Hb_007595_030--Hb_031194_030 Hb_005018_050 Hb_005018_050 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_088080_010--Hb_031194_030 Hb_088080_010--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_088080_010--Hb_003120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174437 0.167339 1.72222 1.18243 0.297714 0.117548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0601392 0.215579 0.0244271 34.3025

CAGE analysis