Hb_007595_030

Information

Type -
Description -
Location Contig7595: 43972-44925
Sequence    

Annotation

kegg
ID pop:Poptr_cp001
description psbA; photosystem II protein D1
nr
ID YP_005089395.1
description psbA gene product (chloroplast) [Silene noctiflora]
swissprot
ID A4GYN9
description Photosystem II protein D1 OS=Populus trichocarpa GN=psbA PE=2 SV=1
trembl
ID H2BLU5
description Photosystem II protein D1 OS=Silene noctiflora GN=psbA PE=3 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii protein d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57206: 38903-47788 , PASA_asmbl_57207: 38903-47788 , PASA_asmbl_57208: 38861-47788 , PASA_asmbl_57209: 38861-47788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007595_030 0.0 - - psbA gene product (chloroplast) [Silene noctiflora]
2 Hb_088080_010 0.0205330697 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
3 Hb_007645_050 0.0383932755 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
4 Hb_031194_030 0.0386367982 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
5 Hb_003963_030 0.0507253564 - - psbB [Jatropha curcas]
6 Hb_005018_050 0.0581646631 - - PREDICTED: licodione synthase-like [Jatropha curcas]
7 Hb_003407_050 0.0592718341 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
8 Hb_003120_090 0.0616807566 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
9 Hb_002835_420 0.0668534226 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
10 Hb_154980_010 0.0676035831 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
11 Hb_000938_050 0.0740044237 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
12 Hb_002704_090 0.0762041119 - - cytochrome P450, putative [Ricinus communis]
13 Hb_106850_010 0.0763377952 - - photosystem II protein D2 [Lactuca sativa]
14 Hb_007933_010 0.0775217284 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_000853_280 0.0798303049 - - PREDICTED: extensin-like [Jatropha curcas]
16 Hb_126973_010 0.0804332594 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
17 Hb_007645_060 0.0841511813 - - cytochrome f [Hevea brasiliensis]
18 Hb_159308_010 0.0843362773 - - ribosomal protein S4 [Cercidiphyllum japonicum]
19 Hb_002093_010 0.0854791681 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
20 Hb_034168_060 0.0874872255 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]

Gene co-expression network

sample Hb_007595_030 Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_007595_030--Hb_088080_010 Hb_007645_050 Hb_007645_050 Hb_007595_030--Hb_007645_050 Hb_031194_030 Hb_031194_030 Hb_007595_030--Hb_031194_030 Hb_003963_030 Hb_003963_030 Hb_007595_030--Hb_003963_030 Hb_005018_050 Hb_005018_050 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_088080_010--Hb_031194_030 Hb_088080_010--Hb_007645_050 Hb_088080_010--Hb_003963_030 Hb_088080_010--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_088080_010--Hb_003120_090 Hb_007645_050--Hb_003963_030 Hb_007645_050--Hb_031194_030 Hb_007645_060 Hb_007645_060 Hb_007645_050--Hb_007645_060 Hb_154980_010 Hb_154980_010 Hb_007645_050--Hb_154980_010 Hb_031194_030--Hb_005018_050 Hb_031194_030--Hb_003120_090 Hb_031194_030--Hb_003407_050 Hb_002704_090 Hb_002704_090 Hb_031194_030--Hb_002704_090 Hb_003963_030--Hb_154980_010 Hb_003963_030--Hb_031194_030 Hb_002835_420 Hb_002835_420 Hb_003963_030--Hb_002835_420 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_003120_090 Hb_005018_050--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_005018_050--Hb_007933_010 Hb_003407_050--Hb_003120_090 Hb_003407_050--Hb_002704_090 Hb_003407_050--Hb_088080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.457507 3.44413 50.8701 22.9588 0.80501 1.23377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107512 0.126831 0.775669 1.29364 1131.37

CAGE analysis