Hb_002835_420

Information

Type -
Description -
Location Contig2835: 376098-377925
Sequence    

Annotation

kegg
ID mtr:MTR_3g035600
description Photosystem I P700 chlorophyll a apoprotein
nr
ID AES69823.2
description photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
swissprot
ID Q09FW2
description Photosystem I P700 chlorophyll a apoprotein A2 OS=Nandina domestica GN=psaB PE=3 SV=1
trembl
ID G7J0Z5
description Photosystem I P700 chlorophyll A apoprotein A2 OS=Medicago truncatula GN=MTR_3g035600 PE=3 SV=2
Gene Ontology
ID GO:0009522
description photosystem i p700 apoprotein partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_420 0.0 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
2 Hb_154980_010 0.0215563553 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
3 Hb_106850_010 0.0318455483 - - photosystem II protein D2 [Lactuca sativa]
4 Hb_104509_010 0.0470390573 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
5 Hb_031194_030 0.048262053 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
6 Hb_126973_010 0.0517209265 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
7 Hb_006302_050 0.0524541577 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
8 Hb_003144_020 0.0630227934 - - (R)-limonene synthase, putative [Ricinus communis]
9 Hb_131816_010 0.0630513419 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_007645_050 0.0651566973 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
11 Hb_088080_010 0.0662206879 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
12 Hb_007595_030 0.0668534226 - - psbA gene product (chloroplast) [Silene noctiflora]
13 Hb_003963_030 0.0674824383 - - psbB [Jatropha curcas]
14 Hb_005018_050 0.0675124461 - - PREDICTED: licodione synthase-like [Jatropha curcas]
15 Hb_003688_030 0.0681426012 - - NADH dehydrogenase 2-like ORF 180
16 Hb_000938_050 0.06892142 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
17 Hb_003407_050 0.0701131804 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
18 Hb_002704_090 0.071041745 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001627_070 0.0743217404 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
20 Hb_012184_020 0.0743740766 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002835_420 Hb_002835_420 Hb_154980_010 Hb_154980_010 Hb_002835_420--Hb_154980_010 Hb_106850_010 Hb_106850_010 Hb_002835_420--Hb_106850_010 Hb_104509_010 Hb_104509_010 Hb_002835_420--Hb_104509_010 Hb_031194_030 Hb_031194_030 Hb_002835_420--Hb_031194_030 Hb_126973_010 Hb_126973_010 Hb_002835_420--Hb_126973_010 Hb_006302_050 Hb_006302_050 Hb_002835_420--Hb_006302_050 Hb_154980_010--Hb_106850_010 Hb_154980_010--Hb_104509_010 Hb_154980_010--Hb_006302_050 Hb_154980_010--Hb_126973_010 Hb_154980_010--Hb_031194_030 Hb_106850_010--Hb_104509_010 Hb_106850_010--Hb_006302_050 Hb_106850_010--Hb_126973_010 Hb_003144_020 Hb_003144_020 Hb_106850_010--Hb_003144_020 Hb_104509_010--Hb_006302_050 Hb_104509_010--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_104509_010--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020 Hb_088080_010 Hb_088080_010 Hb_031194_030--Hb_088080_010 Hb_005018_050 Hb_005018_050 Hb_031194_030--Hb_005018_050 Hb_007595_030 Hb_007595_030 Hb_031194_030--Hb_007595_030 Hb_003120_090 Hb_003120_090 Hb_031194_030--Hb_003120_090 Hb_003407_050 Hb_003407_050 Hb_031194_030--Hb_003407_050 Hb_002704_090 Hb_002704_090 Hb_031194_030--Hb_002704_090 Hb_126973_010--Hb_005018_050 Hb_126973_010--Hb_006302_050 Hb_126973_010--Hb_104509_010 Hb_006302_050--Hb_005914_030 Hb_006302_050--Hb_003144_020 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0882861 0.148927 2.70852 0.782752 0.0253803 0.047299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0427368 0.0723859 106.764

CAGE analysis