Hb_031194_030

Information

Type -
Description -
Location Contig31194: 4704-5608
Sequence    

Annotation

kegg
ID ppp:PhpapaCp031
description rbcL; RuBisCO large subunit
nr
ID CAB85677.2
description ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
swissprot
ID P36486
description Ribulose bisphosphate carboxylase large chain (Fragment) OS=Saururus cernuus GN=rbcL PE=3 SV=1
trembl
ID Q9MTS5
description Ribulose 1,5-bisphosphate carboxylase/oxygenase (Fragment) OS=Stackhousia minima GN=rbcL PE=3 SV=2
Gene Ontology
ID GO:0000287
description ribulose- -bisphosphate carboxylase oxygenase large partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031194_030 0.0 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
2 Hb_088080_010 0.0343631226 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
3 Hb_005018_050 0.0371941414 - - PREDICTED: licodione synthase-like [Jatropha curcas]
4 Hb_007595_030 0.0386367982 - - psbA gene product (chloroplast) [Silene noctiflora]
5 Hb_003120_090 0.0400679619 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
6 Hb_003407_050 0.0430053187 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_002704_090 0.0460195422 - - cytochrome P450, putative [Ricinus communis]
8 Hb_002835_420 0.048262053 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
9 Hb_007645_050 0.0523733189 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
10 Hb_154980_010 0.0562788296 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
11 Hb_002093_010 0.0592752344 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
12 Hb_007933_010 0.061234141 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_126973_010 0.0624315523 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
14 Hb_106850_010 0.0641803423 - - photosystem II protein D2 [Lactuca sativa]
15 Hb_000938_050 0.0641901371 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
16 Hb_003963_030 0.0667839226 - - psbB [Jatropha curcas]
17 Hb_000853_280 0.0676945316 - - PREDICTED: extensin-like [Jatropha curcas]
18 Hb_000627_060 0.0692103901 - - -
19 Hb_006435_020 0.0790908421 - - sugar transporter, putative [Ricinus communis]
20 Hb_009193_050 0.0801447252 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]

Gene co-expression network

sample Hb_031194_030 Hb_031194_030 Hb_088080_010 Hb_088080_010 Hb_031194_030--Hb_088080_010 Hb_005018_050 Hb_005018_050 Hb_031194_030--Hb_005018_050 Hb_007595_030 Hb_007595_030 Hb_031194_030--Hb_007595_030 Hb_003120_090 Hb_003120_090 Hb_031194_030--Hb_003120_090 Hb_003407_050 Hb_003407_050 Hb_031194_030--Hb_003407_050 Hb_002704_090 Hb_002704_090 Hb_031194_030--Hb_002704_090 Hb_088080_010--Hb_007595_030 Hb_007645_050 Hb_007645_050 Hb_088080_010--Hb_007645_050 Hb_003963_030 Hb_003963_030 Hb_088080_010--Hb_003963_030 Hb_088080_010--Hb_005018_050 Hb_088080_010--Hb_003120_090 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_003120_090 Hb_005018_050--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_005018_050--Hb_007933_010 Hb_007595_030--Hb_007645_050 Hb_007595_030--Hb_003963_030 Hb_007595_030--Hb_005018_050 Hb_007595_030--Hb_003407_050 Hb_003120_090--Hb_003407_050 Hb_003120_090--Hb_002704_090 Hb_003120_090--Hb_007933_010 Hb_000853_280 Hb_000853_280 Hb_003120_090--Hb_000853_280 Hb_003407_050--Hb_002704_090 Hb_003407_050--Hb_088080_010 Hb_002093_010 Hb_002093_010 Hb_002704_090--Hb_002093_010 Hb_000627_060 Hb_000627_060 Hb_002704_090--Hb_000627_060 Hb_002704_090--Hb_007933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.24207 0.630735 21.3914 6.29669 0.0311197 0.211663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.10779 0.122136 487.645

CAGE analysis