Hb_019253_040

Information

Type -
Description -
Location Contig19253: 31156-32514
Sequence    

Annotation

kegg
ID rcu:RCOM_0608630
description hypothetical protein
nr
ID XP_002521962.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SR19
description Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=2 SV=1
trembl
ID B9S7J3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0608630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19186: 30917-32586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019253_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007645_060 0.0962669231 - - cytochrome f [Hevea brasiliensis]
3 Hb_182972_020 0.1056695409 - - cytochrome b6 [Gossypium barbadense]
4 Hb_004811_010 0.1116595837 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
5 Hb_051924_010 0.1130703755 - - BnaA01g34100D [Brassica napus]
6 Hb_151890_020 0.1132394489 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
7 Hb_001338_080 0.1186717922 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
8 Hb_179142_010 0.1234147795 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
9 Hb_149598_010 0.123670985 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
10 Hb_001645_020 0.1262499055 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
11 Hb_000627_200 0.1271682636 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
12 Hb_001338_170 0.1276419116 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
13 Hb_000920_020 0.1282565334 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
14 Hb_007645_050 0.1287217347 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
15 Hb_159308_010 0.1297938737 - - ribosomal protein S4 [Cercidiphyllum japonicum]
16 Hb_000156_240 0.1298470927 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
17 Hb_003963_030 0.1304470958 - - psbB [Jatropha curcas]
18 Hb_088080_040 0.130463539 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
19 Hb_003693_020 0.1306141667 - - Ycf1, partial (chloroplast) [Clusia rosea]
20 Hb_088080_010 0.1351732878 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]

Gene co-expression network

sample Hb_019253_040 Hb_019253_040 Hb_007645_060 Hb_007645_060 Hb_019253_040--Hb_007645_060 Hb_182972_020 Hb_182972_020 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_051924_010 Hb_051924_010 Hb_019253_040--Hb_051924_010 Hb_151890_020 Hb_151890_020 Hb_019253_040--Hb_151890_020 Hb_001338_080 Hb_001338_080 Hb_019253_040--Hb_001338_080 Hb_007645_050 Hb_007645_050 Hb_007645_060--Hb_007645_050 Hb_007645_060--Hb_182972_020 Hb_149598_010 Hb_149598_010 Hb_007645_060--Hb_149598_010 Hb_003963_030 Hb_003963_030 Hb_007645_060--Hb_003963_030 Hb_000627_200 Hb_000627_200 Hb_007645_060--Hb_000627_200 Hb_001338_170 Hb_001338_170 Hb_007645_060--Hb_001338_170 Hb_182972_020--Hb_000627_200 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_182972_020--Hb_151890_020 Hb_182972_020--Hb_051924_010 Hb_182972_020--Hb_007645_050 Hb_004811_010--Hb_007645_060 Hb_088080_040 Hb_088080_040 Hb_004811_010--Hb_088080_040 Hb_031194_010 Hb_031194_010 Hb_004811_010--Hb_031194_010 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_004811_010--Hb_149598_010 Hb_004811_010--Hb_151890_020 Hb_051924_010--Hb_000627_200 Hb_051924_010--Hb_001338_080 Hb_051924_010--Hb_007645_060 Hb_003693_030 Hb_003693_030 Hb_051924_010--Hb_003693_030 Hb_151890_020--Hb_007645_060 Hb_151890_020--Hb_003963_030 Hb_151890_020--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_151890_020--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_151890_020--Hb_088080_010 Hb_141708_010 Hb_141708_010 Hb_001338_080--Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_001338_080--Hb_001674_050 Hb_001338_080--Hb_182972_020 Hb_001338_080--Hb_007645_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.420807 0.825479 6.26403 1.74375 0.473346 1.51542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140075 1.95595 0.463949 0.528587 100.989

CAGE analysis