Hb_001674_050

Information

Type -
Description -
Location Contig1674: 116578-116895
Sequence    

Annotation

kegg
ID pvu:PhvuCp54
description petB; cytochrome b6
nr
ID YP_009111685.1
description cytochrome b6 (chloroplast) [Apios americana]
swissprot
ID Q6EW22
description Cytochrome b6 OS=Nymphaea alba GN=petB PE=3 SV=1
trembl
ID Q4FFV8
description Cytochrome b6 (Fragment) OS=Nuphar advena GN=petB PE=3 SV=1
Gene Ontology
ID GO:0009535
description cytochrome b6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001674_050 0.0 - - cytochrome b6 (chloroplast) [Apios americana]
2 Hb_141708_010 0.0753162069 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
3 Hb_001338_080 0.1020595959 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
4 Hb_063885_010 0.1133357454 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
5 Hb_182972_020 0.1144705483 - - cytochrome b6 [Gossypium barbadense]
6 Hb_001083_040 0.1157675691 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
7 Hb_151890_020 0.1215266159 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
8 Hb_000156_240 0.1223308046 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
9 Hb_000627_200 0.1238123283 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
10 Hb_051924_010 0.1251674344 - - BnaA01g34100D [Brassica napus]
11 Hb_000832_050 0.1277066352 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
12 Hb_001338_170 0.1293643049 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
13 Hb_007645_060 0.1318774832 - - cytochrome f [Hevea brasiliensis]
14 Hb_001610_100 0.1329987232 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
15 Hb_115031_010 0.1359547655 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
16 Hb_159308_010 0.1374616905 - - ribosomal protein S4 [Cercidiphyllum japonicum]
17 Hb_000648_150 0.138854442 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
18 Hb_003693_030 0.143535403 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
19 Hb_004542_030 0.1450670759 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
20 Hb_007645_070 0.1484934275 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]

Gene co-expression network

sample Hb_001674_050 Hb_001674_050 Hb_141708_010 Hb_141708_010 Hb_001674_050--Hb_141708_010 Hb_001338_080 Hb_001338_080 Hb_001674_050--Hb_001338_080 Hb_063885_010 Hb_063885_010 Hb_001674_050--Hb_063885_010 Hb_182972_020 Hb_182972_020 Hb_001674_050--Hb_182972_020 Hb_001083_040 Hb_001083_040 Hb_001674_050--Hb_001083_040 Hb_151890_020 Hb_151890_020 Hb_001674_050--Hb_151890_020 Hb_141708_010--Hb_001338_080 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010 Hb_051924_010 Hb_051924_010 Hb_001338_080--Hb_051924_010 Hb_001338_080--Hb_182972_020 Hb_019253_040 Hb_019253_040 Hb_001338_080--Hb_019253_040 Hb_007645_060 Hb_007645_060 Hb_001338_080--Hb_007645_060 Hb_003947_020 Hb_003947_020 Hb_063885_010--Hb_003947_020 Hb_026188_010 Hb_026188_010 Hb_063885_010--Hb_026188_010 Hb_034168_060 Hb_034168_060 Hb_063885_010--Hb_034168_060 Hb_009095_020 Hb_009095_020 Hb_063885_010--Hb_009095_020 Hb_000336_130 Hb_000336_130 Hb_063885_010--Hb_000336_130 Hb_000696_200 Hb_000696_200 Hb_063885_010--Hb_000696_200 Hb_182972_020--Hb_000627_200 Hb_182972_020--Hb_007645_060 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_182972_020--Hb_151890_020 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_000156_240 Hb_000156_240 Hb_001083_040--Hb_000156_240 Hb_103465_010 Hb_103465_010 Hb_001083_040--Hb_103465_010 Hb_004542_030 Hb_004542_030 Hb_001083_040--Hb_004542_030 Hb_001135_190 Hb_001135_190 Hb_001083_040--Hb_001135_190 Hb_185274_020 Hb_185274_020 Hb_001083_040--Hb_185274_020 Hb_151890_020--Hb_007645_060 Hb_003963_030 Hb_003963_030 Hb_151890_020--Hb_003963_030 Hb_151890_020--Hb_007645_050 Hb_007595_030 Hb_007595_030 Hb_151890_020--Hb_007595_030 Hb_088080_010 Hb_088080_010 Hb_151890_020--Hb_088080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.552887 0.65241 9.28537 8.75579 0.267987 4.12318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.86961 0.117081 131.538

CAGE analysis