Hb_103465_010

Information

Type -
Description -
Location Contig103465: 283-1358
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00021
description rpoB; RNA polymerase beta subunit
nr
ID YP_004327649.1
description RNA polymerase beta subunit [Hevea brasiliensis]
swissprot
ID Q14FG5
description DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB PE=3 SV=1
trembl
ID F2X0A3
description DNA-directed RNA polymerase subunit beta OS=Hevea brasiliensis GN=rpoB PE=3 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase beta subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103465_010 0.0 - - RNA polymerase beta subunit [Hevea brasiliensis]
2 Hb_000156_240 0.0829369661 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
3 Hb_003693_060 0.0922072724 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
4 Hb_001083_040 0.0933803979 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
5 Hb_004811_010 0.1041491427 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
6 Hb_031194_010 0.1131555541 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
7 Hb_004542_030 0.1180244724 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
8 Hb_088080_040 0.1208846783 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
9 Hb_002027_420 0.1301518788 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
10 Hb_179142_010 0.1323628811 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
11 Hb_005399_040 0.139052024 - - RNA polymerase beta subunit [Hevea brasiliensis]
12 Hb_051924_010 0.1412524756 - - BnaA01g34100D [Brassica napus]
13 Hb_001135_190 0.1412825265 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
14 Hb_001338_170 0.1424986302 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
15 Hb_003963_040 0.142578471 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
16 Hb_006040_090 0.1430710507 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
17 Hb_151890_020 0.1457601825 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
18 Hb_185274_020 0.1467769742 - - Ycf2 (chloroplast) [Andrographis paniculata]
19 Hb_185274_010 0.1489589651 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
20 Hb_007645_060 0.1504570617 - - cytochrome f [Hevea brasiliensis]

Gene co-expression network

sample Hb_103465_010 Hb_103465_010 Hb_000156_240 Hb_000156_240 Hb_103465_010--Hb_000156_240 Hb_003693_060 Hb_003693_060 Hb_103465_010--Hb_003693_060 Hb_001083_040 Hb_001083_040 Hb_103465_010--Hb_001083_040 Hb_004811_010 Hb_004811_010 Hb_103465_010--Hb_004811_010 Hb_031194_010 Hb_031194_010 Hb_103465_010--Hb_031194_010 Hb_004542_030 Hb_004542_030 Hb_103465_010--Hb_004542_030 Hb_000156_240--Hb_001083_040 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_000156_240--Hb_031194_010 Hb_000156_240--Hb_004811_010 Hb_003693_060--Hb_031194_010 Hb_088080_040 Hb_088080_040 Hb_003693_060--Hb_088080_040 Hb_003693_060--Hb_004811_010 Hb_003693_060--Hb_000156_240 Hb_003963_040 Hb_003963_040 Hb_003693_060--Hb_003963_040 Hb_001083_040--Hb_004542_030 Hb_001135_190 Hb_001135_190 Hb_001083_040--Hb_001135_190 Hb_185274_020 Hb_185274_020 Hb_001083_040--Hb_185274_020 Hb_001674_050 Hb_001674_050 Hb_001083_040--Hb_001674_050 Hb_007645_060 Hb_007645_060 Hb_004811_010--Hb_007645_060 Hb_004811_010--Hb_088080_040 Hb_004811_010--Hb_031194_010 Hb_006040_090 Hb_006040_090 Hb_004811_010--Hb_006040_090 Hb_149598_010 Hb_149598_010 Hb_004811_010--Hb_149598_010 Hb_151890_020 Hb_151890_020 Hb_004811_010--Hb_151890_020 Hb_031194_010--Hb_088080_040 Hb_031194_010--Hb_007645_060 Hb_001338_170 Hb_001338_170 Hb_031194_010--Hb_001338_170 Hb_004542_030--Hb_002027_420 Hb_004542_030--Hb_001135_190 Hb_004542_030--Hb_004811_010 Hb_000832_050 Hb_000832_050 Hb_004542_030--Hb_000832_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203727 0.199339 2.15203 0.279672 0.162714 0.189936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.218992 0 14.8107

CAGE analysis