Hb_000832_050

Information

Type -
Description -
Location Contig832: 38571-39280
Sequence    

Annotation

kegg
ID fve:101305619
description ribulose bisphosphate carboxylase large chain-like
nr
ID AAT68670.1
description ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
swissprot
ID Q32042
description Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus officinalis GN=rbcL PE=3 SV=2
trembl
ID Q4L1E6
description Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Marila laxiflora GN=rbcL PE=3 SV=1
Gene Ontology
ID GO:0003824
description ribulose- -bisphosphate carboxylase oxygenase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_050 0.0 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
2 Hb_004855_030 0.0671157609 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000349_150 0.0754715396 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
4 Hb_000893_040 0.0758017616 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
5 Hb_008489_030 0.0767170396 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_000977_260 0.0809684138 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
7 Hb_003251_010 0.0810300036 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
8 Hb_004150_020 0.0813835668 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_020805_090 0.0820641254 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
10 Hb_002997_060 0.0830953361 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
11 Hb_000398_110 0.0845846419 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
12 Hb_015981_010 0.0847045946 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001610_100 0.0852211415 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_003208_010 0.0879154202 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_020859_010 0.0899856546 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
16 Hb_003947_020 0.0903168942 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_011689_070 0.0930457615 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
18 Hb_000922_110 0.0932826052 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
19 Hb_006040_090 0.0958686688 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
20 Hb_000083_010 0.0981895423 - - -

Gene co-expression network

sample Hb_000832_050 Hb_000832_050 Hb_004855_030 Hb_004855_030 Hb_000832_050--Hb_004855_030 Hb_000349_150 Hb_000349_150 Hb_000832_050--Hb_000349_150 Hb_000893_040 Hb_000893_040 Hb_000832_050--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_000832_050--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_000832_050--Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_000832_050--Hb_003251_010 Hb_004855_030--Hb_000349_150 Hb_020805_090 Hb_020805_090 Hb_004855_030--Hb_020805_090 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_004855_030--Hb_003208_010 Hb_004855_030--Hb_000893_040 Hb_000922_110 Hb_000922_110 Hb_000349_150--Hb_000922_110 Hb_011689_070 Hb_011689_070 Hb_000349_150--Hb_011689_070 Hb_000349_150--Hb_020805_090 Hb_004150_020 Hb_004150_020 Hb_000349_150--Hb_004150_020 Hb_000349_150--Hb_000977_260 Hb_000893_040--Hb_008489_030 Hb_000893_040--Hb_000977_260 Hb_015981_010 Hb_015981_010 Hb_000893_040--Hb_015981_010 Hb_000893_040--Hb_003251_010 Hb_020859_010 Hb_020859_010 Hb_000893_040--Hb_020859_010 Hb_002997_060 Hb_002997_060 Hb_000893_040--Hb_002997_060 Hb_008489_030--Hb_015981_010 Hb_008489_030--Hb_002997_060 Hb_008489_030--Hb_000977_260 Hb_008489_030--Hb_020859_010 Hb_008489_030--Hb_003251_010 Hb_000977_260--Hb_003251_010 Hb_000977_260--Hb_003208_010 Hb_000398_110 Hb_000398_110 Hb_000977_260--Hb_000398_110 Hb_000977_260--Hb_020859_010 Hb_003251_010--Hb_003208_010 Hb_000282_110 Hb_000282_110 Hb_003251_010--Hb_000282_110 Hb_003251_010--Hb_000398_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.313921 0.576777 33.8795 20.0656 0.597811 1.60944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.988461 310.053

CAGE analysis