Hb_008489_030

Information

Type -
Description -
Location Contig8489: 23060-27252
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60273: 21866-22290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008489_030 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_000893_040 0.0144231764 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
3 Hb_015981_010 0.0233138705 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002997_060 0.0354581857 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
5 Hb_000977_260 0.0417509251 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
6 Hb_020859_010 0.0422978819 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
7 Hb_003251_010 0.0483500796 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
8 Hb_004150_020 0.0544398348 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_000696_200 0.0597451227 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
10 Hb_003053_090 0.0598155359 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
11 Hb_003208_010 0.0611783766 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_003228_060 0.0709099156 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000398_110 0.0714898003 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
14 Hb_043327_010 0.0718835155 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
15 Hb_004855_030 0.0731509929 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_000349_150 0.0736071025 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
17 Hb_005171_020 0.0755857407 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
18 Hb_027751_070 0.0762621804 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
19 Hb_000832_050 0.0767170396 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
20 Hb_020805_090 0.0820638773 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008489_030 Hb_008489_030 Hb_000893_040 Hb_000893_040 Hb_008489_030--Hb_000893_040 Hb_015981_010 Hb_015981_010 Hb_008489_030--Hb_015981_010 Hb_002997_060 Hb_002997_060 Hb_008489_030--Hb_002997_060 Hb_000977_260 Hb_000977_260 Hb_008489_030--Hb_000977_260 Hb_020859_010 Hb_020859_010 Hb_008489_030--Hb_020859_010 Hb_003251_010 Hb_003251_010 Hb_008489_030--Hb_003251_010 Hb_000893_040--Hb_000977_260 Hb_000893_040--Hb_015981_010 Hb_000893_040--Hb_003251_010 Hb_000893_040--Hb_020859_010 Hb_000893_040--Hb_002997_060 Hb_015981_010--Hb_020859_010 Hb_003053_090 Hb_003053_090 Hb_015981_010--Hb_003053_090 Hb_004150_020 Hb_004150_020 Hb_015981_010--Hb_004150_020 Hb_015981_010--Hb_002997_060 Hb_000696_200 Hb_000696_200 Hb_002997_060--Hb_000696_200 Hb_043327_010 Hb_043327_010 Hb_002997_060--Hb_043327_010 Hb_005171_020 Hb_005171_020 Hb_002997_060--Hb_005171_020 Hb_003228_060 Hb_003228_060 Hb_002997_060--Hb_003228_060 Hb_000977_260--Hb_003251_010 Hb_003208_010 Hb_003208_010 Hb_000977_260--Hb_003208_010 Hb_000398_110 Hb_000398_110 Hb_000977_260--Hb_000398_110 Hb_000977_260--Hb_020859_010 Hb_020859_010--Hb_003053_090 Hb_020859_010--Hb_004150_020 Hb_027751_070 Hb_027751_070 Hb_020859_010--Hb_027751_070 Hb_003251_010--Hb_003208_010 Hb_000282_110 Hb_000282_110 Hb_003251_010--Hb_000282_110 Hb_003251_010--Hb_000398_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0255241 0.0140408 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.254748

CAGE analysis