Hb_003208_010

Information

Type -
Description -
Location Contig3208: 7450-8430
Sequence    

Annotation

kegg
ID rcu:RCOM_0592550
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012091048.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067LC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01308 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lrr receptor-like serine threonine-protein kinase efr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003208_010 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_003251_010 0.0186427422 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
3 Hb_000977_260 0.0232487386 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
4 Hb_000282_110 0.0332240383 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
5 Hb_000398_110 0.0388535201 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
6 Hb_013818_020 0.0423174927 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
7 Hb_000893_040 0.0476908887 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
8 Hb_007416_250 0.0534819834 - - -
9 Hb_020805_090 0.0566058121 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
10 Hb_013405_240 0.0571477053 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
11 Hb_000083_010 0.0588357165 - - -
12 Hb_008489_030 0.0611783766 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_027751_070 0.0633152502 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
14 Hb_004855_030 0.0642226933 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_020859_010 0.0665505031 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
16 Hb_000762_050 0.0672596739 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
17 Hb_001089_120 0.0684004071 - - PREDICTED: pectinesterase [Jatropha curcas]
18 Hb_000003_530 0.0736748036 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
19 Hb_015981_010 0.0773836605 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_004150_020 0.0784100169 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_003208_010 Hb_003208_010 Hb_003251_010 Hb_003251_010 Hb_003208_010--Hb_003251_010 Hb_000977_260 Hb_000977_260 Hb_003208_010--Hb_000977_260 Hb_000282_110 Hb_000282_110 Hb_003208_010--Hb_000282_110 Hb_000398_110 Hb_000398_110 Hb_003208_010--Hb_000398_110 Hb_013818_020 Hb_013818_020 Hb_003208_010--Hb_013818_020 Hb_000893_040 Hb_000893_040 Hb_003208_010--Hb_000893_040 Hb_003251_010--Hb_000977_260 Hb_003251_010--Hb_000893_040 Hb_003251_010--Hb_000282_110 Hb_008489_030 Hb_008489_030 Hb_003251_010--Hb_008489_030 Hb_003251_010--Hb_000398_110 Hb_000977_260--Hb_000893_040 Hb_000977_260--Hb_000398_110 Hb_000977_260--Hb_008489_030 Hb_020859_010 Hb_020859_010 Hb_000977_260--Hb_020859_010 Hb_000282_110--Hb_013818_020 Hb_007416_250 Hb_007416_250 Hb_000282_110--Hb_007416_250 Hb_013405_240 Hb_013405_240 Hb_000282_110--Hb_013405_240 Hb_000762_050 Hb_000762_050 Hb_000282_110--Hb_000762_050 Hb_000083_010 Hb_000083_010 Hb_000398_110--Hb_000083_010 Hb_027751_070 Hb_027751_070 Hb_000398_110--Hb_027751_070 Hb_000398_110--Hb_000282_110 Hb_013818_020--Hb_007416_250 Hb_013818_020--Hb_013405_240 Hb_013818_020--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_013818_020--Hb_000003_530 Hb_000893_040--Hb_008489_030 Hb_015981_010 Hb_015981_010 Hb_000893_040--Hb_015981_010 Hb_000893_040--Hb_020859_010 Hb_002997_060 Hb_002997_060 Hb_000893_040--Hb_002997_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.514711 0.250146 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.3358

CAGE analysis