Hb_000003_530

Information

Type -
Description -
Location Contig3: 378698-379255
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18920g
description POPTRDRAFT_171763; hypothetical protein
nr
ID XP_012069099.1
description PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24871 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_530 0.0 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
2 Hb_002161_010 0.0172614332 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
3 Hb_000762_050 0.0251658585 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
4 Hb_008725_280 0.026260106 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
5 Hb_004116_030 0.03408297 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
6 Hb_016334_010 0.0401128704 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
7 Hb_000245_090 0.0414763754 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
8 Hb_013818_020 0.0417951931 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
9 Hb_001038_020 0.0461668547 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
10 Hb_004611_010 0.0555276638 - - Blue copper protein precursor, putative [Ricinus communis]
11 Hb_000282_110 0.058128309 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
12 Hb_000083_010 0.060907362 - - -
13 Hb_007416_250 0.0614066383 - - -
14 Hb_013405_240 0.0638041278 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
15 Hb_003653_030 0.0645463023 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000398_110 0.0657300541 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
17 Hb_027751_070 0.0713855004 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
18 Hb_032631_060 0.0718692686 - - Myosin heavy chain, putative [Ricinus communis]
19 Hb_003208_010 0.0736748036 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_001104_080 0.0742951007 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_530 Hb_000003_530 Hb_002161_010 Hb_002161_010 Hb_000003_530--Hb_002161_010 Hb_000762_050 Hb_000762_050 Hb_000003_530--Hb_000762_050 Hb_008725_280 Hb_008725_280 Hb_000003_530--Hb_008725_280 Hb_004116_030 Hb_004116_030 Hb_000003_530--Hb_004116_030 Hb_016334_010 Hb_016334_010 Hb_000003_530--Hb_016334_010 Hb_000245_090 Hb_000245_090 Hb_000003_530--Hb_000245_090 Hb_002161_010--Hb_008725_280 Hb_002161_010--Hb_000245_090 Hb_002161_010--Hb_000762_050 Hb_004611_010 Hb_004611_010 Hb_002161_010--Hb_004611_010 Hb_001038_020 Hb_001038_020 Hb_002161_010--Hb_001038_020 Hb_000762_050--Hb_004116_030 Hb_013818_020 Hb_013818_020 Hb_000762_050--Hb_013818_020 Hb_000762_050--Hb_016334_010 Hb_000282_110 Hb_000282_110 Hb_000762_050--Hb_000282_110 Hb_008725_280--Hb_000245_090 Hb_008725_280--Hb_004611_010 Hb_008725_280--Hb_001038_020 Hb_008725_280--Hb_004116_030 Hb_004116_030--Hb_016334_010 Hb_004116_030--Hb_002161_010 Hb_003653_030 Hb_003653_030 Hb_004116_030--Hb_003653_030 Hb_132840_050 Hb_132840_050 Hb_016334_010--Hb_132840_050 Hb_000243_190 Hb_000243_190 Hb_016334_010--Hb_000243_190 Hb_016334_010--Hb_008725_280 Hb_000245_090--Hb_004611_010 Hb_000245_090--Hb_001038_020 Hb_000245_090--Hb_004116_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.925 0.746977 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 12.0189

CAGE analysis