Hb_001038_020

Information

Type -
Description -
Location Contig1038: 35386-35697
Sequence    

Annotation

kegg
ID tcc:TCM_018856
description hypothetical protein
nr
ID KDP27272.1
description hypothetical protein JCGZ_19971 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01410: 35127-35753 , PASA_asmbl_01411: 34501-35880
cDNA
(Sanger)
(ID:Location)		 033_J04.ab1: 35176-35753 , 034_J18.ab1: 34501-35880 , 038_P19.ab1: 35197-35753 , 043_D12.ab1: 35197-35753

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001038_020 0.0 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
2 Hb_008725_280 0.0386890715 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
3 Hb_002161_010 0.0412312961 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
4 Hb_000003_530 0.0461668547 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
5 Hb_000762_050 0.0466270729 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
6 Hb_000245_090 0.0479280599 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
7 Hb_004611_010 0.0493183198 - - Blue copper protein precursor, putative [Ricinus communis]
8 Hb_004116_030 0.0524889238 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
9 Hb_032631_060 0.0574264124 - - Myosin heavy chain, putative [Ricinus communis]
10 Hb_003653_030 0.0605289726 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_016334_010 0.0625761989 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
12 Hb_001104_080 0.063275388 - - peroxiredoxin, putative [Ricinus communis]
13 Hb_027403_010 0.0666134461 - - P66 protein [Hevea brasiliensis]
14 Hb_007559_020 0.0683116847 - - peptidylprolyl isomerase, putative [Ricinus communis]
15 Hb_003436_040 0.0686679854 - - monovalent cation:proton antiporter, putative [Ricinus communis]
16 Hb_000692_200 0.072392028 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
17 Hb_097940_010 0.0748683151 - - pollen protein Ole E I-like protein [Medicago truncatula]
18 Hb_009663_030 0.075161844 - - Blue copper protein precursor, putative [Ricinus communis]
19 Hb_013818_020 0.0770194849 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
20 Hb_000139_010 0.0787859534 - - -

Gene co-expression network

sample Hb_001038_020 Hb_001038_020 Hb_008725_280 Hb_008725_280 Hb_001038_020--Hb_008725_280 Hb_002161_010 Hb_002161_010 Hb_001038_020--Hb_002161_010 Hb_000003_530 Hb_000003_530 Hb_001038_020--Hb_000003_530 Hb_000762_050 Hb_000762_050 Hb_001038_020--Hb_000762_050 Hb_000245_090 Hb_000245_090 Hb_001038_020--Hb_000245_090 Hb_004611_010 Hb_004611_010 Hb_001038_020--Hb_004611_010 Hb_008725_280--Hb_002161_010 Hb_008725_280--Hb_000003_530 Hb_008725_280--Hb_000245_090 Hb_008725_280--Hb_004611_010 Hb_004116_030 Hb_004116_030 Hb_008725_280--Hb_004116_030 Hb_002161_010--Hb_000003_530 Hb_002161_010--Hb_000245_090 Hb_002161_010--Hb_000762_050 Hb_002161_010--Hb_004611_010 Hb_000003_530--Hb_000762_050 Hb_000003_530--Hb_004116_030 Hb_016334_010 Hb_016334_010 Hb_000003_530--Hb_016334_010 Hb_000003_530--Hb_000245_090 Hb_000762_050--Hb_004116_030 Hb_013818_020 Hb_013818_020 Hb_000762_050--Hb_013818_020 Hb_000762_050--Hb_016334_010 Hb_000282_110 Hb_000282_110 Hb_000762_050--Hb_000282_110 Hb_000245_090--Hb_004611_010 Hb_000245_090--Hb_004116_030 Hb_027403_010 Hb_027403_010 Hb_004611_010--Hb_027403_010 Hb_003436_040 Hb_003436_040 Hb_004611_010--Hb_003436_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 74.1814 14.4366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.679503 0.2674 0 0.123207 270.126

CAGE analysis