Hb_016334_010

Information

Type -
Description -
Location Contig16334: 18-1434
Sequence    

Annotation

kegg
ID rcu:RCOM_0592420
description receptor-kinase, putative
nr
ID KDP44811.1
description hypothetical protein JCGZ_01311 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067L8N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01311 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016334_010 0.0 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
2 Hb_000762_050 0.0379589249 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
3 Hb_000003_530 0.0401128704 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
4 Hb_004116_030 0.0413687377 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
5 Hb_132840_050 0.0417105117 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
6 Hb_000243_190 0.0444765729 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
7 Hb_008725_280 0.0475668581 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
8 Hb_013818_020 0.0482348947 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
9 Hb_013405_240 0.0508098637 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
10 Hb_007416_250 0.0509966845 - - -
11 Hb_002161_010 0.0525905466 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
12 Hb_000825_010 0.0546450538 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
13 Hb_001104_080 0.0571986274 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_000245_090 0.0588670413 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
15 Hb_000029_150 0.059396237 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001038_020 0.0625761989 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
17 Hb_007559_020 0.0633059066 - - peptidylprolyl isomerase, putative [Ricinus communis]
18 Hb_153106_010 0.0636983261 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
19 Hb_000282_110 0.0644396123 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
20 Hb_003653_030 0.0659437408 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_016334_010 Hb_016334_010 Hb_000762_050 Hb_000762_050 Hb_016334_010--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_016334_010--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_016334_010--Hb_004116_030 Hb_132840_050 Hb_132840_050 Hb_016334_010--Hb_132840_050 Hb_000243_190 Hb_000243_190 Hb_016334_010--Hb_000243_190 Hb_008725_280 Hb_008725_280 Hb_016334_010--Hb_008725_280 Hb_000762_050--Hb_000003_530 Hb_000762_050--Hb_004116_030 Hb_013818_020 Hb_013818_020 Hb_000762_050--Hb_013818_020 Hb_002161_010 Hb_002161_010 Hb_000762_050--Hb_002161_010 Hb_000282_110 Hb_000282_110 Hb_000762_050--Hb_000282_110 Hb_000003_530--Hb_002161_010 Hb_000003_530--Hb_008725_280 Hb_000003_530--Hb_004116_030 Hb_000245_090 Hb_000245_090 Hb_000003_530--Hb_000245_090 Hb_004116_030--Hb_002161_010 Hb_004116_030--Hb_008725_280 Hb_003653_030 Hb_003653_030 Hb_004116_030--Hb_003653_030 Hb_153106_010 Hb_153106_010 Hb_132840_050--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_132840_050--Hb_180007_010 Hb_132840_050--Hb_000243_190 Hb_000251_160 Hb_000251_160 Hb_132840_050--Hb_000251_160 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010 Hb_013405_240 Hb_013405_240 Hb_000243_190--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_000243_190--Hb_007416_250 Hb_000940_060 Hb_000940_060 Hb_000243_190--Hb_000940_060 Hb_000029_150 Hb_000029_150 Hb_000243_190--Hb_000029_150 Hb_008725_280--Hb_002161_010 Hb_008725_280--Hb_000245_090 Hb_004611_010 Hb_004611_010 Hb_008725_280--Hb_004611_010 Hb_001038_020 Hb_001038_020 Hb_008725_280--Hb_001038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.941464 0.308245 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.40851

CAGE analysis