Hb_003436_040

Information

Type -
Description -
Location Contig3436: 92020-96842
Sequence    

Annotation

kegg
ID rcu:RCOM_1249010
description monovalent cation:proton antiporter, putative
nr
ID XP_002527747.1
description monovalent cation:proton antiporter, putative [Ricinus communis]
swissprot
ID Q9M353
description Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1
trembl
ID B9SP28
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_1249010 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation h(+) antiporter 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35898: 92478-92781 , PASA_asmbl_35900: 93068-95289 , PASA_asmbl_35902: 95734-96554 , PASA_asmbl_35903: 96657-96766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003436_040 0.0 - - monovalent cation:proton antiporter, putative [Ricinus communis]
2 Hb_000692_200 0.0391664994 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
3 Hb_004611_010 0.0425786275 - - Blue copper protein precursor, putative [Ricinus communis]
4 Hb_001038_040 0.0522851519 - - -
5 Hb_009663_030 0.0550127769 - - Blue copper protein precursor, putative [Ricinus communis]
6 Hb_011628_050 0.0617619324 - - PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_027403_010 0.0624368988 - - P66 protein [Hevea brasiliensis]
8 Hb_008725_280 0.0637071053 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
9 Hb_002161_010 0.0659508018 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
10 Hb_000245_090 0.0660159341 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
11 Hb_001038_020 0.0686679854 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
12 Hb_000326_110 0.0708199181 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
13 Hb_000037_090 0.0748696062 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
14 Hb_019064_010 0.0768226712 - - -
15 Hb_000003_530 0.0813877546 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
16 Hb_185830_050 0.0821730073 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
17 Hb_008566_060 0.0840521288 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000139_010 0.085789765 - - -
19 Hb_003337_080 0.0864146556 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
20 Hb_007559_020 0.0864201931 - - peptidylprolyl isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003436_040 Hb_003436_040 Hb_000692_200 Hb_000692_200 Hb_003436_040--Hb_000692_200 Hb_004611_010 Hb_004611_010 Hb_003436_040--Hb_004611_010 Hb_001038_040 Hb_001038_040 Hb_003436_040--Hb_001038_040 Hb_009663_030 Hb_009663_030 Hb_003436_040--Hb_009663_030 Hb_011628_050 Hb_011628_050 Hb_003436_040--Hb_011628_050 Hb_027403_010 Hb_027403_010 Hb_003436_040--Hb_027403_010 Hb_000692_200--Hb_001038_040 Hb_000692_200--Hb_011628_050 Hb_000692_200--Hb_009663_030 Hb_000692_200--Hb_004611_010 Hb_019064_010 Hb_019064_010 Hb_000692_200--Hb_019064_010 Hb_008725_280 Hb_008725_280 Hb_004611_010--Hb_008725_280 Hb_004611_010--Hb_027403_010 Hb_000245_090 Hb_000245_090 Hb_004611_010--Hb_000245_090 Hb_002161_010 Hb_002161_010 Hb_004611_010--Hb_002161_010 Hb_001038_020 Hb_001038_020 Hb_004611_010--Hb_001038_020 Hb_001038_040--Hb_011628_050 Hb_005656_220 Hb_005656_220 Hb_001038_040--Hb_005656_220 Hb_001038_040--Hb_004611_010 Hb_001038_040--Hb_002161_010 Hb_003337_080 Hb_003337_080 Hb_009663_030--Hb_003337_080 Hb_009663_030--Hb_004611_010 Hb_001671_130 Hb_001671_130 Hb_009663_030--Hb_001671_130 Hb_009663_030--Hb_008725_280 Hb_000326_110 Hb_000326_110 Hb_011628_050--Hb_000326_110 Hb_000134_240 Hb_000134_240 Hb_011628_050--Hb_000134_240 Hb_011628_050--Hb_005656_220 Hb_000139_010 Hb_000139_010 Hb_027403_010--Hb_000139_010 Hb_097940_010 Hb_097940_010 Hb_027403_010--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_027403_010--Hb_007559_020 Hb_001279_380 Hb_001279_380 Hb_027403_010--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_027403_010--Hb_008566_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00772802 0.065004 16.2277 1.38396 0 0.00726286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0175389 0 0.0263139 0.00548023 55.3949

CAGE analysis