Hb_001671_130

Information

Type -
Description -
Location Contig1671: 171926-182571
Sequence    

Annotation

kegg
ID cic:CICLE_v10030988mg
description hypothetical protein
nr
ID XP_012080984.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067K2P1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16170 PE=4 SV=1
Gene Ontology
ID GO:0009506
description protein nuclear fusion defective 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_130 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
2 Hb_028227_050 0.0500706092 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
3 Hb_009663_030 0.0625696347 - - Blue copper protein precursor, putative [Ricinus communis]
4 Hb_002995_060 0.0758657339 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
5 Hb_001287_070 0.0790944938 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
6 Hb_019064_010 0.0845662823 - - -
7 Hb_001832_180 0.0848494608 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
8 Hb_011068_010 0.0864467447 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
9 Hb_003653_030 0.0910174075 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_003337_080 0.0932687908 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_000029_390 0.0938125387 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_000282_100 0.0957511587 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
13 Hb_000010_380 0.0978526423 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
14 Hb_000841_040 0.0981503717 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
15 Hb_003090_050 0.098872857 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
16 Hb_004116_030 0.099014831 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
17 Hb_032631_060 0.0991170234 - - Myosin heavy chain, putative [Ricinus communis]
18 Hb_009093_020 0.0999255552 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
19 Hb_004631_020 0.1015313158 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_000805_080 0.101994385 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001671_130 Hb_001671_130 Hb_028227_050 Hb_028227_050 Hb_001671_130--Hb_028227_050 Hb_009663_030 Hb_009663_030 Hb_001671_130--Hb_009663_030 Hb_002995_060 Hb_002995_060 Hb_001671_130--Hb_002995_060 Hb_001287_070 Hb_001287_070 Hb_001671_130--Hb_001287_070 Hb_019064_010 Hb_019064_010 Hb_001671_130--Hb_019064_010 Hb_001832_180 Hb_001832_180 Hb_001671_130--Hb_001832_180 Hb_028227_050--Hb_009663_030 Hb_028227_050--Hb_001287_070 Hb_028227_050--Hb_002995_060 Hb_011068_010 Hb_011068_010 Hb_028227_050--Hb_011068_010 Hb_028227_050--Hb_001832_180 Hb_003436_040 Hb_003436_040 Hb_009663_030--Hb_003436_040 Hb_003337_080 Hb_003337_080 Hb_009663_030--Hb_003337_080 Hb_004611_010 Hb_004611_010 Hb_009663_030--Hb_004611_010 Hb_000692_200 Hb_000692_200 Hb_009663_030--Hb_000692_200 Hb_008725_280 Hb_008725_280 Hb_009663_030--Hb_008725_280 Hb_000029_390 Hb_000029_390 Hb_002995_060--Hb_000029_390 Hb_004920_080 Hb_004920_080 Hb_002995_060--Hb_004920_080 Hb_000629_110 Hb_000629_110 Hb_002995_060--Hb_000629_110 Hb_011381_120 Hb_011381_120 Hb_002995_060--Hb_011381_120 Hb_004712_230 Hb_004712_230 Hb_002995_060--Hb_004712_230 Hb_001287_070--Hb_011068_010 Hb_001046_060 Hb_001046_060 Hb_001287_070--Hb_001046_060 Hb_005000_120 Hb_005000_120 Hb_001287_070--Hb_005000_120 Hb_003090_050 Hb_003090_050 Hb_001287_070--Hb_003090_050 Hb_000805_080 Hb_000805_080 Hb_001287_070--Hb_000805_080 Hb_000010_380 Hb_000010_380 Hb_001287_070--Hb_000010_380 Hb_019064_010--Hb_009663_030 Hb_000037_090 Hb_000037_090 Hb_019064_010--Hb_000037_090 Hb_019064_010--Hb_000692_200 Hb_011628_050 Hb_011628_050 Hb_019064_010--Hb_011628_050 Hb_019064_010--Hb_003436_040 Hb_001038_040 Hb_001038_040 Hb_019064_010--Hb_001038_040 Hb_000841_040 Hb_000841_040 Hb_001832_180--Hb_000841_040 Hb_001832_180--Hb_003090_050 Hb_001832_180--Hb_000010_380 Hb_001135_170 Hb_001135_170 Hb_001832_180--Hb_001135_170 Hb_001832_180--Hb_001287_070 Hb_000282_100 Hb_000282_100 Hb_001832_180--Hb_000282_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0107337 0.0896214 0.0161353 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.367074

CAGE analysis