Hb_009663_030

Information

Type -
Description -
Location Contig9663: 28123-28446
Sequence    

Annotation

kegg
ID rcu:RCOM_1075010
description Blue copper protein precursor, putative
nr
ID XP_002527190.1
description Blue copper protein precursor, putative [Ricinus communis]
swissprot
ID Q07488
description Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2
trembl
ID B9SMH1
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1075010 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63904: 27788-28245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009663_030 0.0 - - Blue copper protein precursor, putative [Ricinus communis]
2 Hb_003436_040 0.0550127769 - - monovalent cation:proton antiporter, putative [Ricinus communis]
3 Hb_003337_080 0.0595454632 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
4 Hb_004611_010 0.060150879 - - Blue copper protein precursor, putative [Ricinus communis]
5 Hb_001671_130 0.0625696347 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_000692_200 0.063728239 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
7 Hb_008725_280 0.0652606524 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
8 Hb_002161_010 0.0665360754 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
9 Hb_019064_010 0.0667836383 - - -
10 Hb_000245_090 0.0693383685 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
11 Hb_004116_030 0.0695667934 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
12 Hb_032631_060 0.0704479565 - - Myosin heavy chain, putative [Ricinus communis]
13 Hb_000037_090 0.0704859563 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
14 Hb_003653_030 0.0706443897 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_011068_010 0.0707135963 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_000805_080 0.0744204575 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
17 Hb_027403_010 0.0748334496 - - P66 protein [Hevea brasiliensis]
18 Hb_001038_020 0.075161844 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
19 Hb_001038_040 0.0760636939 - - -
20 Hb_000003_530 0.0761294036 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]

Gene co-expression network

sample Hb_009663_030 Hb_009663_030 Hb_003436_040 Hb_003436_040 Hb_009663_030--Hb_003436_040 Hb_003337_080 Hb_003337_080 Hb_009663_030--Hb_003337_080 Hb_004611_010 Hb_004611_010 Hb_009663_030--Hb_004611_010 Hb_001671_130 Hb_001671_130 Hb_009663_030--Hb_001671_130 Hb_000692_200 Hb_000692_200 Hb_009663_030--Hb_000692_200 Hb_008725_280 Hb_008725_280 Hb_009663_030--Hb_008725_280 Hb_003436_040--Hb_000692_200 Hb_003436_040--Hb_004611_010 Hb_001038_040 Hb_001038_040 Hb_003436_040--Hb_001038_040 Hb_011628_050 Hb_011628_050 Hb_003436_040--Hb_011628_050 Hb_027403_010 Hb_027403_010 Hb_003436_040--Hb_027403_010 Hb_011068_010 Hb_011068_010 Hb_003337_080--Hb_011068_010 Hb_000805_080 Hb_000805_080 Hb_003337_080--Hb_000805_080 Hb_005605_020 Hb_005605_020 Hb_003337_080--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_003337_080--Hb_001046_060 Hb_000640_090 Hb_000640_090 Hb_003337_080--Hb_000640_090 Hb_001287_070 Hb_001287_070 Hb_003337_080--Hb_001287_070 Hb_004611_010--Hb_008725_280 Hb_004611_010--Hb_027403_010 Hb_000245_090 Hb_000245_090 Hb_004611_010--Hb_000245_090 Hb_002161_010 Hb_002161_010 Hb_004611_010--Hb_002161_010 Hb_001038_020 Hb_001038_020 Hb_004611_010--Hb_001038_020 Hb_028227_050 Hb_028227_050 Hb_001671_130--Hb_028227_050 Hb_002995_060 Hb_002995_060 Hb_001671_130--Hb_002995_060 Hb_001671_130--Hb_001287_070 Hb_019064_010 Hb_019064_010 Hb_001671_130--Hb_019064_010 Hb_001832_180 Hb_001832_180 Hb_001671_130--Hb_001832_180 Hb_000692_200--Hb_001038_040 Hb_000692_200--Hb_011628_050 Hb_000692_200--Hb_004611_010 Hb_000692_200--Hb_019064_010 Hb_008725_280--Hb_002161_010 Hb_000003_530 Hb_000003_530 Hb_008725_280--Hb_000003_530 Hb_008725_280--Hb_000245_090 Hb_008725_280--Hb_001038_020 Hb_004116_030 Hb_004116_030 Hb_008725_280--Hb_004116_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.264028 8.2685 1.10081 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 29.506

CAGE analysis