Hb_000692_200

Information

Type -
Description -
Location Contig692: 169153-170052
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26700g
description POPTRDRAFT_206527; hypothetical protein
nr
ID XP_012073721.1
description PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
swissprot
ID Q9SGS4
description Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana GN=CDSP32 PE=1 SV=1
trembl
ID A0A067KPE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08164 PE=4 SV=1
Gene Ontology
ID GO:0009941
description thioredoxin-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 037_C01.ab1: 169363-170165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_200 0.0 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
2 Hb_003436_040 0.0391664994 - - monovalent cation:proton antiporter, putative [Ricinus communis]
3 Hb_001038_040 0.0438257586 - - -
4 Hb_011628_050 0.0543503772 - - PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_009663_030 0.063728239 - - Blue copper protein precursor, putative [Ricinus communis]
6 Hb_004611_010 0.0666840364 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_019064_010 0.0677319207 - - -
8 Hb_001038_020 0.072392028 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
9 Hb_002161_010 0.074028413 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
10 Hb_000326_110 0.0743343433 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
11 Hb_008725_280 0.0786434531 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
12 Hb_000245_090 0.0792116933 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
13 Hb_005656_220 0.0795186097 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
14 Hb_001210_110 0.0848879982 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
15 Hb_027751_070 0.0853066037 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
16 Hb_000083_010 0.0859996931 - - -
17 Hb_000003_530 0.087618962 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
18 Hb_000037_090 0.0888630637 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
19 Hb_004116_030 0.0916504176 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
20 Hb_000134_240 0.0921464499 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000692_200 Hb_000692_200 Hb_003436_040 Hb_003436_040 Hb_000692_200--Hb_003436_040 Hb_001038_040 Hb_001038_040 Hb_000692_200--Hb_001038_040 Hb_011628_050 Hb_011628_050 Hb_000692_200--Hb_011628_050 Hb_009663_030 Hb_009663_030 Hb_000692_200--Hb_009663_030 Hb_004611_010 Hb_004611_010 Hb_000692_200--Hb_004611_010 Hb_019064_010 Hb_019064_010 Hb_000692_200--Hb_019064_010 Hb_003436_040--Hb_004611_010 Hb_003436_040--Hb_001038_040 Hb_003436_040--Hb_009663_030 Hb_003436_040--Hb_011628_050 Hb_027403_010 Hb_027403_010 Hb_003436_040--Hb_027403_010 Hb_001038_040--Hb_011628_050 Hb_005656_220 Hb_005656_220 Hb_001038_040--Hb_005656_220 Hb_001038_040--Hb_004611_010 Hb_002161_010 Hb_002161_010 Hb_001038_040--Hb_002161_010 Hb_000326_110 Hb_000326_110 Hb_011628_050--Hb_000326_110 Hb_000134_240 Hb_000134_240 Hb_011628_050--Hb_000134_240 Hb_011628_050--Hb_005656_220 Hb_003337_080 Hb_003337_080 Hb_009663_030--Hb_003337_080 Hb_009663_030--Hb_004611_010 Hb_001671_130 Hb_001671_130 Hb_009663_030--Hb_001671_130 Hb_008725_280 Hb_008725_280 Hb_009663_030--Hb_008725_280 Hb_004611_010--Hb_008725_280 Hb_004611_010--Hb_027403_010 Hb_000245_090 Hb_000245_090 Hb_004611_010--Hb_000245_090 Hb_004611_010--Hb_002161_010 Hb_001038_020 Hb_001038_020 Hb_004611_010--Hb_001038_020 Hb_019064_010--Hb_009663_030 Hb_000037_090 Hb_000037_090 Hb_019064_010--Hb_000037_090 Hb_019064_010--Hb_011628_050 Hb_019064_010--Hb_003436_040 Hb_019064_010--Hb_001038_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.325573 46.1738 3.85408 0.0253162 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231542 0.136565 0.0831632 0.0183573 185.939

CAGE analysis