Hb_005656_220

Information

Type -
Description -
Location Contig5656: 188010-189901
Sequence    

Annotation

kegg
ID pop:POPTR_0006s29350g
description hypothetical protein
nr
ID XP_011002963.1
description PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GEZ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s29350g PE=4 SV=1
Gene Ontology
ID GO:0005773
description extracellular ligand-gated ion channel protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49033: 188490-188997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_220 0.0 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
2 Hb_002040_070 0.0407861296 - - -
3 Hb_001210_110 0.0563981558 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
4 Hb_027751_070 0.0566041959 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
5 Hb_001038_040 0.0581311454 - - -
6 Hb_011628_050 0.0692573352 - - PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000083_010 0.0726724176 - - -
8 Hb_003053_090 0.0728352303 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
9 Hb_020859_010 0.0729896619 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
10 Hb_006040_090 0.0738425717 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
11 Hb_000692_200 0.0795186097 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
12 Hb_006495_030 0.0796240167 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
13 Hb_004150_020 0.0881394214 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_000134_240 0.0891920229 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000398_110 0.0908506424 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
16 Hb_174230_010 0.0926543418 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
17 Hb_012758_010 0.0955067372 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
18 Hb_002818_140 0.0955173649 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002161_010 0.0959242932 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
20 Hb_005271_210 0.0960577907 - - hypothetical protein JCGZ_20628 [Jatropha curcas]

Gene co-expression network

sample Hb_005656_220 Hb_005656_220 Hb_002040_070 Hb_002040_070 Hb_005656_220--Hb_002040_070 Hb_001210_110 Hb_001210_110 Hb_005656_220--Hb_001210_110 Hb_027751_070 Hb_027751_070 Hb_005656_220--Hb_027751_070 Hb_001038_040 Hb_001038_040 Hb_005656_220--Hb_001038_040 Hb_011628_050 Hb_011628_050 Hb_005656_220--Hb_011628_050 Hb_000083_010 Hb_000083_010 Hb_005656_220--Hb_000083_010 Hb_002040_070--Hb_001210_110 Hb_003053_090 Hb_003053_090 Hb_002040_070--Hb_003053_090 Hb_002040_070--Hb_027751_070 Hb_020859_010 Hb_020859_010 Hb_002040_070--Hb_020859_010 Hb_006495_030 Hb_006495_030 Hb_002040_070--Hb_006495_030 Hb_006040_090 Hb_006040_090 Hb_001210_110--Hb_006040_090 Hb_001210_110--Hb_027751_070 Hb_001210_110--Hb_000083_010 Hb_001210_110--Hb_006495_030 Hb_027751_070--Hb_000083_010 Hb_027751_070--Hb_020859_010 Hb_000398_110 Hb_000398_110 Hb_027751_070--Hb_000398_110 Hb_000977_260 Hb_000977_260 Hb_027751_070--Hb_000977_260 Hb_001038_040--Hb_011628_050 Hb_000692_200 Hb_000692_200 Hb_001038_040--Hb_000692_200 Hb_003436_040 Hb_003436_040 Hb_001038_040--Hb_003436_040 Hb_004611_010 Hb_004611_010 Hb_001038_040--Hb_004611_010 Hb_002161_010 Hb_002161_010 Hb_001038_040--Hb_002161_010 Hb_000326_110 Hb_000326_110 Hb_011628_050--Hb_000326_110 Hb_011628_050--Hb_000692_200 Hb_011628_050--Hb_003436_040 Hb_000134_240 Hb_000134_240 Hb_011628_050--Hb_000134_240 Hb_000083_010--Hb_000398_110 Hb_000083_010--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_000083_010--Hb_003208_010 Hb_000083_010--Hb_020859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0168747 0 1.83274 0.199118 0.0127121 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.8438

CAGE analysis