Hb_002040_070

Information

Type -
Description -
Location Contig2040: 135441-136446
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002040_070 0.0 - - -
2 Hb_005656_220 0.0407861296 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
3 Hb_001210_110 0.0441182412 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
4 Hb_003053_090 0.051545131 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
5 Hb_027751_070 0.051954116 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
6 Hb_020859_010 0.0547727126 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
7 Hb_006495_030 0.0561900551 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
8 Hb_006040_090 0.0618028205 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
9 Hb_001038_040 0.0698681788 - - -
10 Hb_004150_020 0.0720642291 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_000083_010 0.0731656861 - - -
12 Hb_000853_280 0.076237005 - - PREDICTED: extensin-like [Jatropha curcas]
13 Hb_003053_100 0.0768862114 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
14 Hb_015981_010 0.0806227736 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_174230_010 0.08130402 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
16 Hb_007933_010 0.0827076231 - - ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_020327_010 0.0854234144 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
18 Hb_000692_240 0.0855109985 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
19 Hb_049187_010 0.0855461091 - - hypothetical protein, partial [Pseudomonas fluorescens]
20 Hb_011628_050 0.0884464398 - - PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002040_070 Hb_002040_070 Hb_005656_220 Hb_005656_220 Hb_002040_070--Hb_005656_220 Hb_001210_110 Hb_001210_110 Hb_002040_070--Hb_001210_110 Hb_003053_090 Hb_003053_090 Hb_002040_070--Hb_003053_090 Hb_027751_070 Hb_027751_070 Hb_002040_070--Hb_027751_070 Hb_020859_010 Hb_020859_010 Hb_002040_070--Hb_020859_010 Hb_006495_030 Hb_006495_030 Hb_002040_070--Hb_006495_030 Hb_005656_220--Hb_001210_110 Hb_005656_220--Hb_027751_070 Hb_001038_040 Hb_001038_040 Hb_005656_220--Hb_001038_040 Hb_011628_050 Hb_011628_050 Hb_005656_220--Hb_011628_050 Hb_000083_010 Hb_000083_010 Hb_005656_220--Hb_000083_010 Hb_006040_090 Hb_006040_090 Hb_001210_110--Hb_006040_090 Hb_001210_110--Hb_027751_070 Hb_001210_110--Hb_000083_010 Hb_001210_110--Hb_006495_030 Hb_003053_090--Hb_020859_010 Hb_004150_020 Hb_004150_020 Hb_003053_090--Hb_004150_020 Hb_015981_010 Hb_015981_010 Hb_003053_090--Hb_015981_010 Hb_003053_090--Hb_027751_070 Hb_003053_090--Hb_006040_090 Hb_027751_070--Hb_000083_010 Hb_027751_070--Hb_020859_010 Hb_000398_110 Hb_000398_110 Hb_027751_070--Hb_000398_110 Hb_000977_260 Hb_000977_260 Hb_027751_070--Hb_000977_260 Hb_020859_010--Hb_015981_010 Hb_000893_040 Hb_000893_040 Hb_020859_010--Hb_000893_040 Hb_020859_010--Hb_004150_020 Hb_008489_030 Hb_008489_030 Hb_020859_010--Hb_008489_030 Hb_006495_030--Hb_006040_090 Hb_003053_100 Hb_003053_100 Hb_006495_030--Hb_003053_100 Hb_006495_030--Hb_003053_090 Hb_000853_280 Hb_000853_280 Hb_006495_030--Hb_000853_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.86669 0.217693 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 12.9106

CAGE analysis