Hb_003053_100

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig3053: 125837-126643
Sequence    

Annotation

kegg
ID tcc:TCM_016886
description Myb domain protein 66, putative
nr
ID XP_012081531.1
description PREDICTED: transcription factor WER-like [Jatropha curcas]
swissprot
ID Q9SEI0
description Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1
trembl
ID A0A067LKV6
description MYB family protein OS=Jatropha curcas GN=JCGZ_09589 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor wer

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_100 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
2 Hb_006495_030 0.0488955698 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
3 Hb_006040_090 0.059289261 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
4 Hb_007933_010 0.070298372 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_000853_280 0.0707725606 - - PREDICTED: extensin-like [Jatropha curcas]
6 Hb_001210_110 0.0726204724 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
7 Hb_007741_060 0.0741403935 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
8 Hb_002093_010 0.0748655993 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
9 Hb_000627_060 0.0766227117 - - -
10 Hb_002040_070 0.0768862114 - - -
11 Hb_006435_020 0.0805080479 - - sugar transporter, putative [Ricinus communis]
12 Hb_002421_170 0.0835411674 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
13 Hb_000648_090 0.0837862533 - - -
14 Hb_001511_040 0.0848861668 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
15 Hb_003053_090 0.0851858955 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
16 Hb_035265_020 0.0853392623 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000922_110 0.0883387965 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
18 Hb_177343_020 0.0896150561 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
19 Hb_004150_020 0.0902981647 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_002704_090 0.090344382 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_003053_100 Hb_003053_100 Hb_006495_030 Hb_006495_030 Hb_003053_100--Hb_006495_030 Hb_006040_090 Hb_006040_090 Hb_003053_100--Hb_006040_090 Hb_007933_010 Hb_007933_010 Hb_003053_100--Hb_007933_010 Hb_000853_280 Hb_000853_280 Hb_003053_100--Hb_000853_280 Hb_001210_110 Hb_001210_110 Hb_003053_100--Hb_001210_110 Hb_007741_060 Hb_007741_060 Hb_003053_100--Hb_007741_060 Hb_006495_030--Hb_006040_090 Hb_002040_070 Hb_002040_070 Hb_006495_030--Hb_002040_070 Hb_006495_030--Hb_001210_110 Hb_003053_090 Hb_003053_090 Hb_006495_030--Hb_003053_090 Hb_006495_030--Hb_000853_280 Hb_006040_090--Hb_001210_110 Hb_006040_090--Hb_003053_090 Hb_006040_090--Hb_002040_070 Hb_004150_020 Hb_004150_020 Hb_006040_090--Hb_004150_020 Hb_007933_010--Hb_000853_280 Hb_003120_090 Hb_003120_090 Hb_007933_010--Hb_003120_090 Hb_002093_010 Hb_002093_010 Hb_007933_010--Hb_002093_010 Hb_002704_090 Hb_002704_090 Hb_007933_010--Hb_002704_090 Hb_000627_060 Hb_000627_060 Hb_007933_010--Hb_000627_060 Hb_005018_050 Hb_005018_050 Hb_007933_010--Hb_005018_050 Hb_000853_280--Hb_003120_090 Hb_000853_280--Hb_002093_010 Hb_000853_280--Hb_002704_090 Hb_000853_280--Hb_005018_050 Hb_000853_280--Hb_000627_060 Hb_001210_110--Hb_002040_070 Hb_027751_070 Hb_027751_070 Hb_001210_110--Hb_027751_070 Hb_005656_220 Hb_005656_220 Hb_001210_110--Hb_005656_220 Hb_000083_010 Hb_000083_010 Hb_001210_110--Hb_000083_010 Hb_007741_060--Hb_000627_060 Hb_007741_060--Hb_002093_010 Hb_006435_020 Hb_006435_020 Hb_007741_060--Hb_006435_020 Hb_177343_020 Hb_177343_020 Hb_007741_060--Hb_177343_020 Hb_004643_030 Hb_004643_030 Hb_007741_060--Hb_004643_030 Hb_004567_080 Hb_004567_080 Hb_007741_060--Hb_004567_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0405315 1.13858 0.0969608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0358704 11.1785

CAGE analysis