Hb_001210_110

Information

Type -
Description -
Location Contig1210: 117490-119025
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17680g
description POPTRDRAFT_548646; gibberellin 3-beta-hydroxylase family protein
nr
ID XP_012073283.1
description PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
swissprot
ID O24648
description Gibberellin 3-beta-dioxygenase 1 OS=Pisum sativum GN=LE PE=1 SV=1
trembl
ID A0A067KZA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06225 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 3-beta-dioxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06480: 118581-118800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001210_110 0.0 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
2 Hb_002040_070 0.0441182412 - - -
3 Hb_006040_090 0.0518747661 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
4 Hb_027751_070 0.0531101114 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
5 Hb_005656_220 0.0563981558 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
6 Hb_000083_010 0.0565256553 - - -
7 Hb_006495_030 0.0578942743 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
8 Hb_003053_090 0.0596933816 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
9 Hb_020859_010 0.0600294634 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
10 Hb_004150_020 0.0621238393 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_000349_150 0.0712934874 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
12 Hb_003053_100 0.0726204724 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
13 Hb_001038_040 0.0751570032 - - -
14 Hb_000922_110 0.0761913216 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
15 Hb_000398_110 0.0835404466 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
16 Hb_015981_010 0.0845882136 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000692_200 0.0848879982 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
18 Hb_000977_260 0.0852661028 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
19 Hb_000893_040 0.08911582 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
20 Hb_020805_090 0.0895034839 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001210_110 Hb_001210_110 Hb_002040_070 Hb_002040_070 Hb_001210_110--Hb_002040_070 Hb_006040_090 Hb_006040_090 Hb_001210_110--Hb_006040_090 Hb_027751_070 Hb_027751_070 Hb_001210_110--Hb_027751_070 Hb_005656_220 Hb_005656_220 Hb_001210_110--Hb_005656_220 Hb_000083_010 Hb_000083_010 Hb_001210_110--Hb_000083_010 Hb_006495_030 Hb_006495_030 Hb_001210_110--Hb_006495_030 Hb_002040_070--Hb_005656_220 Hb_003053_090 Hb_003053_090 Hb_002040_070--Hb_003053_090 Hb_002040_070--Hb_027751_070 Hb_020859_010 Hb_020859_010 Hb_002040_070--Hb_020859_010 Hb_002040_070--Hb_006495_030 Hb_006040_090--Hb_006495_030 Hb_006040_090--Hb_003053_090 Hb_003053_100 Hb_003053_100 Hb_006040_090--Hb_003053_100 Hb_006040_090--Hb_002040_070 Hb_004150_020 Hb_004150_020 Hb_006040_090--Hb_004150_020 Hb_027751_070--Hb_000083_010 Hb_027751_070--Hb_020859_010 Hb_000398_110 Hb_000398_110 Hb_027751_070--Hb_000398_110 Hb_000977_260 Hb_000977_260 Hb_027751_070--Hb_000977_260 Hb_005656_220--Hb_027751_070 Hb_001038_040 Hb_001038_040 Hb_005656_220--Hb_001038_040 Hb_011628_050 Hb_011628_050 Hb_005656_220--Hb_011628_050 Hb_005656_220--Hb_000083_010 Hb_000083_010--Hb_000398_110 Hb_000083_010--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_000083_010--Hb_003208_010 Hb_000083_010--Hb_020859_010 Hb_006495_030--Hb_003053_100 Hb_006495_030--Hb_003053_090 Hb_000853_280 Hb_000853_280 Hb_006495_030--Hb_000853_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0534003 2.63697 0.399301 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0128231 17.3536

CAGE analysis