Hb_011628_050

Information

Type -
Description -
Location Contig11628: 33521-36058
Sequence    

Annotation

kegg
ID rcu:RCOM_0300960
description GTP cyclohydrolase II, putative (EC:3.5.4.25)
nr
ID XP_012064967.1
description PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9FN89
description Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Arabidopsis thaliana GN=RIBA3 PE=1 SV=1
trembl
ID A0A067LIV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05651 PE=3 SV=1
Gene Ontology
ID GO:0003935
description monofunctional riboflavin biosynthesis protein riba chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011628_050 0.0 - - PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001038_040 0.0421422162 - - -
3 Hb_000326_110 0.0515796216 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
4 Hb_000692_200 0.0543503772 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
5 Hb_003436_040 0.0617619324 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_000134_240 0.0650521819 - - cytochrome P450, putative [Ricinus communis]
7 Hb_005656_220 0.0692573352 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
8 Hb_019064_010 0.0759015504 - - -
9 Hb_004611_010 0.0783176606 - - Blue copper protein precursor, putative [Ricinus communis]
10 Hb_001357_320 0.0827127485 - - GRP3S, putative [Ricinus communis]
11 Hb_124016_010 0.0827211821 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
12 Hb_001761_090 0.0828117411 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
13 Hb_005305_180 0.0829653404 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
14 Hb_058242_010 0.0830474812 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
15 Hb_006332_050 0.0830515731 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
16 Hb_081874_010 0.0830558109 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
17 Hb_147503_020 0.0830987589 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
18 Hb_184798_050 0.0835910349 - - -
19 Hb_007926_030 0.0837008475 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
20 Hb_058844_010 0.0840756965 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_011628_050 Hb_011628_050 Hb_001038_040 Hb_001038_040 Hb_011628_050--Hb_001038_040 Hb_000326_110 Hb_000326_110 Hb_011628_050--Hb_000326_110 Hb_000692_200 Hb_000692_200 Hb_011628_050--Hb_000692_200 Hb_003436_040 Hb_003436_040 Hb_011628_050--Hb_003436_040 Hb_000134_240 Hb_000134_240 Hb_011628_050--Hb_000134_240 Hb_005656_220 Hb_005656_220 Hb_011628_050--Hb_005656_220 Hb_001038_040--Hb_000692_200 Hb_001038_040--Hb_003436_040 Hb_001038_040--Hb_005656_220 Hb_004611_010 Hb_004611_010 Hb_001038_040--Hb_004611_010 Hb_002161_010 Hb_002161_010 Hb_001038_040--Hb_002161_010 Hb_000326_110--Hb_000134_240 Hb_000326_110--Hb_001038_040 Hb_000326_110--Hb_003436_040 Hb_000326_110--Hb_000692_200 Hb_000037_090 Hb_000037_090 Hb_000326_110--Hb_000037_090 Hb_000692_200--Hb_003436_040 Hb_009663_030 Hb_009663_030 Hb_000692_200--Hb_009663_030 Hb_000692_200--Hb_004611_010 Hb_019064_010 Hb_019064_010 Hb_000692_200--Hb_019064_010 Hb_003436_040--Hb_004611_010 Hb_003436_040--Hb_009663_030 Hb_027403_010 Hb_027403_010 Hb_003436_040--Hb_027403_010 Hb_004557_020 Hb_004557_020 Hb_000134_240--Hb_004557_020 Hb_012398_020 Hb_012398_020 Hb_000134_240--Hb_012398_020 Hb_003007_020 Hb_003007_020 Hb_000134_240--Hb_003007_020 Hb_013093_010 Hb_013093_010 Hb_000134_240--Hb_013093_010 Hb_002040_070 Hb_002040_070 Hb_005656_220--Hb_002040_070 Hb_001210_110 Hb_001210_110 Hb_005656_220--Hb_001210_110 Hb_027751_070 Hb_027751_070 Hb_005656_220--Hb_027751_070 Hb_000083_010 Hb_000083_010 Hb_005656_220--Hb_000083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.44569 0.0823469 0.0112219 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00855208 5.95295

CAGE analysis