Hb_000037_090

Information

Type -
Description -
Location Contig37: 156572-159657
Sequence    

Annotation

kegg
ID rcu:RCOM_1689550
description Na(+)/H(+) antiporter, putative
nr
ID XP_002509895.1
description Na(+)/H(+) antiporter, putative [Ricinus communis]
swissprot
ID Q8VYD4
description Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1
trembl
ID B9RCL1
description Na(+)/H(+) antiporter, putative OS=Ricinus communis GN=RCOM_1689550 PE=4 SV=1
Gene Ontology
ID GO:0005770
description cation h(+) antiporter 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000037_090 0.0 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
2 Hb_019064_010 0.0674318468 - - -
3 Hb_009663_030 0.0704859563 - - Blue copper protein precursor, putative [Ricinus communis]
4 Hb_003436_040 0.0748696062 - - monovalent cation:proton antiporter, putative [Ricinus communis]
5 Hb_000326_110 0.0758204514 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
6 Hb_003337_080 0.0831775734 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
7 Hb_000010_380 0.0844444236 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
8 Hb_002041_020 0.0885075958 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
9 Hb_000692_200 0.0888630637 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
10 Hb_185830_050 0.0890432944 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
11 Hb_001832_180 0.0901199873 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
12 Hb_004611_010 0.0905735768 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_027403_010 0.0927643409 - - P66 protein [Hevea brasiliensis]
14 Hb_000805_080 0.0948448367 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
15 Hb_011628_050 0.0956214871 - - PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_160045_010 0.0974999598 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008566_060 0.0979018563 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011068_010 0.1006731711 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
19 Hb_001046_060 0.1007840929 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
20 Hb_032631_060 0.1026693883 - - Myosin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000037_090 Hb_000037_090 Hb_019064_010 Hb_019064_010 Hb_000037_090--Hb_019064_010 Hb_009663_030 Hb_009663_030 Hb_000037_090--Hb_009663_030 Hb_003436_040 Hb_003436_040 Hb_000037_090--Hb_003436_040 Hb_000326_110 Hb_000326_110 Hb_000037_090--Hb_000326_110 Hb_003337_080 Hb_003337_080 Hb_000037_090--Hb_003337_080 Hb_000010_380 Hb_000010_380 Hb_000037_090--Hb_000010_380 Hb_019064_010--Hb_009663_030 Hb_000692_200 Hb_000692_200 Hb_019064_010--Hb_000692_200 Hb_011628_050 Hb_011628_050 Hb_019064_010--Hb_011628_050 Hb_019064_010--Hb_003436_040 Hb_001038_040 Hb_001038_040 Hb_019064_010--Hb_001038_040 Hb_009663_030--Hb_003436_040 Hb_009663_030--Hb_003337_080 Hb_004611_010 Hb_004611_010 Hb_009663_030--Hb_004611_010 Hb_001671_130 Hb_001671_130 Hb_009663_030--Hb_001671_130 Hb_009663_030--Hb_000692_200 Hb_008725_280 Hb_008725_280 Hb_009663_030--Hb_008725_280 Hb_003436_040--Hb_000692_200 Hb_003436_040--Hb_004611_010 Hb_003436_040--Hb_001038_040 Hb_003436_040--Hb_011628_050 Hb_027403_010 Hb_027403_010 Hb_003436_040--Hb_027403_010 Hb_000326_110--Hb_011628_050 Hb_000134_240 Hb_000134_240 Hb_000326_110--Hb_000134_240 Hb_000326_110--Hb_001038_040 Hb_000326_110--Hb_003436_040 Hb_000326_110--Hb_000692_200 Hb_011068_010 Hb_011068_010 Hb_003337_080--Hb_011068_010 Hb_000805_080 Hb_000805_080 Hb_003337_080--Hb_000805_080 Hb_005605_020 Hb_005605_020 Hb_003337_080--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_003337_080--Hb_001046_060 Hb_000640_090 Hb_000640_090 Hb_003337_080--Hb_000640_090 Hb_001287_070 Hb_001287_070 Hb_003337_080--Hb_001287_070 Hb_000010_380--Hb_000805_080 Hb_000010_380--Hb_001046_060 Hb_000010_380--Hb_001287_070 Hb_032631_060 Hb_032631_060 Hb_000010_380--Hb_032631_060 Hb_000010_380--Hb_011068_010 Hb_000010_380--Hb_003337_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.031723 1.0388 0.0656211 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0209921 3.06614

CAGE analysis