Hb_000398_110

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig398: 178989-179855
Sequence    

Annotation

kegg
ID rcu:RCOM_0825030
description transcription factor, putative
nr
ID XP_011012906.1
description PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
swissprot
ID Q9M9S0
description Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana GN=ZHD4 PE=1 SV=1
trembl
ID B9SIQ1
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0825030 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39669: 180306-180781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_110 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
2 Hb_000977_260 0.0379278697 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
3 Hb_003208_010 0.0388535201 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_000083_010 0.0462907043 - - -
5 Hb_027751_070 0.0470248417 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
6 Hb_003251_010 0.0497296165 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
7 Hb_000282_110 0.0520435867 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
8 Hb_013818_020 0.0530468517 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
9 Hb_000893_040 0.0586357005 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
10 Hb_020859_010 0.0599222903 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
11 Hb_020805_090 0.0624035949 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
12 Hb_000762_050 0.0655094712 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
13 Hb_000003_530 0.0657300541 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
14 Hb_007416_250 0.0712741123 - - -
15 Hb_008489_030 0.0714898003 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_002161_010 0.0728730779 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
17 Hb_004150_020 0.0745944239 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
18 Hb_013405_240 0.0749745012 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
19 Hb_004855_030 0.0758679515 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_004116_030 0.0787413257 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_000398_110 Hb_000398_110 Hb_000977_260 Hb_000977_260 Hb_000398_110--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_000398_110--Hb_003208_010 Hb_000083_010 Hb_000083_010 Hb_000398_110--Hb_000083_010 Hb_027751_070 Hb_027751_070 Hb_000398_110--Hb_027751_070 Hb_003251_010 Hb_003251_010 Hb_000398_110--Hb_003251_010 Hb_000282_110 Hb_000282_110 Hb_000398_110--Hb_000282_110 Hb_000977_260--Hb_003251_010 Hb_000977_260--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_000977_260--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_000977_260--Hb_008489_030 Hb_020859_010 Hb_020859_010 Hb_000977_260--Hb_020859_010 Hb_003208_010--Hb_003251_010 Hb_003208_010--Hb_000282_110 Hb_013818_020 Hb_013818_020 Hb_003208_010--Hb_013818_020 Hb_003208_010--Hb_000893_040 Hb_000083_010--Hb_027751_070 Hb_000083_010--Hb_000977_260 Hb_001210_110 Hb_001210_110 Hb_000083_010--Hb_001210_110 Hb_000083_010--Hb_003208_010 Hb_000083_010--Hb_020859_010 Hb_027751_070--Hb_020859_010 Hb_027751_070--Hb_000977_260 Hb_002040_070 Hb_002040_070 Hb_027751_070--Hb_002040_070 Hb_027751_070--Hb_001210_110 Hb_003251_010--Hb_000893_040 Hb_003251_010--Hb_000282_110 Hb_003251_010--Hb_008489_030 Hb_000282_110--Hb_013818_020 Hb_007416_250 Hb_007416_250 Hb_000282_110--Hb_007416_250 Hb_013405_240 Hb_013405_240 Hb_000282_110--Hb_013405_240 Hb_000762_050 Hb_000762_050 Hb_000282_110--Hb_000762_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.71632 0.953735 0 0.0308428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 16.4227

CAGE analysis