Hb_020859_010

Information

Type -
Description -
Location Contig20859: 323-1093
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08890g
description hypothetical protein
nr
ID XP_010999659.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9IQV2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08890g PE=4 SV=2
Gene Ontology
ID GO:0016020
description leucine-rich repeat receptor-like protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020859_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
2 Hb_003053_090 0.0317506514 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
3 Hb_015981_010 0.0322432066 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000893_040 0.0372738082 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
5 Hb_004150_020 0.0407765275 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
6 Hb_008489_030 0.0422978819 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_027751_070 0.0425421298 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
8 Hb_000977_260 0.0441781751 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
9 Hb_002040_070 0.0547727126 - - -
10 Hb_000083_010 0.0597566135 - - -
11 Hb_000398_110 0.0599222903 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
12 Hb_001210_110 0.0600294634 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
13 Hb_003251_010 0.0651904422 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
14 Hb_006040_090 0.0658824973 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
15 Hb_003208_010 0.0665505031 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_000853_280 0.0702201581 - - PREDICTED: extensin-like [Jatropha curcas]
17 Hb_000349_150 0.0718315266 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
18 Hb_005656_220 0.0729896619 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
19 Hb_002997_060 0.0774294959 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
20 Hb_006495_030 0.078090014 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]

Gene co-expression network

sample Hb_020859_010 Hb_020859_010 Hb_003053_090 Hb_003053_090 Hb_020859_010--Hb_003053_090 Hb_015981_010 Hb_015981_010 Hb_020859_010--Hb_015981_010 Hb_000893_040 Hb_000893_040 Hb_020859_010--Hb_000893_040 Hb_004150_020 Hb_004150_020 Hb_020859_010--Hb_004150_020 Hb_008489_030 Hb_008489_030 Hb_020859_010--Hb_008489_030 Hb_027751_070 Hb_027751_070 Hb_020859_010--Hb_027751_070 Hb_003053_090--Hb_004150_020 Hb_003053_090--Hb_015981_010 Hb_002040_070 Hb_002040_070 Hb_003053_090--Hb_002040_070 Hb_003053_090--Hb_027751_070 Hb_006040_090 Hb_006040_090 Hb_003053_090--Hb_006040_090 Hb_015981_010--Hb_008489_030 Hb_015981_010--Hb_000893_040 Hb_015981_010--Hb_004150_020 Hb_002997_060 Hb_002997_060 Hb_015981_010--Hb_002997_060 Hb_000893_040--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_000893_040--Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_000893_040--Hb_003251_010 Hb_000893_040--Hb_002997_060 Hb_004150_020--Hb_000893_040 Hb_004150_020--Hb_008489_030 Hb_004150_020--Hb_000977_260 Hb_008489_030--Hb_002997_060 Hb_008489_030--Hb_000977_260 Hb_008489_030--Hb_003251_010 Hb_000083_010 Hb_000083_010 Hb_027751_070--Hb_000083_010 Hb_000398_110 Hb_000398_110 Hb_027751_070--Hb_000398_110 Hb_027751_070--Hb_000977_260 Hb_027751_070--Hb_002040_070 Hb_001210_110 Hb_001210_110 Hb_027751_070--Hb_001210_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0956122 0.0290147 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.780309

CAGE analysis