Hb_007559_020

Information

Type -
Description -
Location Contig7559: 99359-104894
Sequence    

Annotation

kegg
ID rcu:RCOM_1106620
description peptidylprolyl isomerase, putative (EC:5.2.1.8)
nr
ID XP_002526205.1
description peptidylprolyl isomerase, putative [Ricinus communis]
swissprot
ID Q9FJL3
description Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1
trembl
ID B9SJN6
description Peptidylprolyl isomerase, putative OS=Ricinus communis GN=RCOM_1106620 PE=4 SV=1
Gene Ontology
ID GO:0005515
description 70 kda peptidyl-prolyl isomerase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57048: 99371-100731 , PASA_asmbl_57049: 99428-100737 , PASA_asmbl_57050: 100940-103807
cDNA
(Sanger)
(ID:Location)		 053_A03.ab1: 99383-100668

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007559_020 0.0 - - peptidylprolyl isomerase, putative [Ricinus communis]
2 Hb_097940_010 0.0104874786 - - pollen protein Ole E I-like protein [Medicago truncatula]
3 Hb_000139_010 0.0191403514 - - -
4 Hb_001279_380 0.0293064272 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
5 Hb_027403_010 0.0308592824 - - P66 protein [Hevea brasiliensis]
6 Hb_000825_010 0.0486917619 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
7 Hb_008566_060 0.0509459109 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001104_080 0.0525606302 - - peroxiredoxin, putative [Ricinus communis]
9 Hb_004611_010 0.0534365763 - - Blue copper protein precursor, putative [Ricinus communis]
10 Hb_008725_280 0.0537750839 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
11 Hb_002893_200 0.0581229397 - - aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_000245_090 0.0595432288 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
13 Hb_000640_090 0.0609592282 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
14 Hb_003337_080 0.0626941514 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
15 Hb_016334_010 0.0633059066 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
16 Hb_002014_140 0.0639457811 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
17 Hb_005605_020 0.0641983783 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
18 Hb_185830_050 0.0668669451 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
19 Hb_000805_080 0.0681114664 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
20 Hb_001038_020 0.0683116847 - - hypothetical protein JCGZ_19971 [Jatropha curcas]

Gene co-expression network

sample Hb_007559_020 Hb_007559_020 Hb_097940_010 Hb_097940_010 Hb_007559_020--Hb_097940_010 Hb_000139_010 Hb_000139_010 Hb_007559_020--Hb_000139_010 Hb_001279_380 Hb_001279_380 Hb_007559_020--Hb_001279_380 Hb_027403_010 Hb_027403_010 Hb_007559_020--Hb_027403_010 Hb_000825_010 Hb_000825_010 Hb_007559_020--Hb_000825_010 Hb_008566_060 Hb_008566_060 Hb_007559_020--Hb_008566_060 Hb_097940_010--Hb_000139_010 Hb_097940_010--Hb_001279_380 Hb_097940_010--Hb_027403_010 Hb_097940_010--Hb_008566_060 Hb_002893_200 Hb_002893_200 Hb_097940_010--Hb_002893_200 Hb_000139_010--Hb_001279_380 Hb_000139_010--Hb_027403_010 Hb_000139_010--Hb_008566_060 Hb_000139_010--Hb_002893_200 Hb_001279_380--Hb_008566_060 Hb_001279_380--Hb_027403_010 Hb_001279_380--Hb_002893_200 Hb_004611_010 Hb_004611_010 Hb_027403_010--Hb_004611_010 Hb_027403_010--Hb_008566_060 Hb_001104_080 Hb_001104_080 Hb_000825_010--Hb_001104_080 Hb_000923_030 Hb_000923_030 Hb_000825_010--Hb_000923_030 Hb_000251_160 Hb_000251_160 Hb_000825_010--Hb_000251_160 Hb_132840_050 Hb_132840_050 Hb_000825_010--Hb_132840_050 Hb_005605_020 Hb_005605_020 Hb_000825_010--Hb_005605_020 Hb_185830_050 Hb_185830_050 Hb_008566_060--Hb_185830_050 Hb_008566_060--Hb_002893_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 8.90704 1.63142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 23.8809

CAGE analysis