Hb_185830_050

Information

Type -
Description -
Location Contig185830: 27486-32032
Sequence    

Annotation

kegg
ID rcu:RCOM_0820340
description Stachyose synthase precursor, putative (EC:2.4.1.67)
nr
ID XP_012082223.1
description PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
swissprot
ID Q94A08
description Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2
trembl
ID A0A067K1T9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16422 PE=4 SV=1
Gene Ontology
ID GO:0047268
description probable galactinol--sucrose galactosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18206: 30342-30915 , PASA_asmbl_18207: 30414-30915 , PASA_asmbl_18208: 30958-31690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185830_050 0.0 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
2 Hb_008566_060 0.0268014451 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001279_380 0.0490505267 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
4 Hb_027403_010 0.0502175941 - - P66 protein [Hevea brasiliensis]
5 Hb_000139_010 0.051771447 - - -
6 Hb_000640_090 0.0524619808 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
7 Hb_002893_200 0.0528477749 - - aldehyde dehydrogenase, putative [Ricinus communis]
8 Hb_097940_010 0.0589915634 - - pollen protein Ole E I-like protein [Medicago truncatula]
9 Hb_000083_020 0.0635082062 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_003337_080 0.0655847093 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_007559_020 0.0668669451 - - peptidylprolyl isomerase, putative [Ricinus communis]
12 Hb_000313_130 0.0695262839 - - zinc finger protein, putative [Ricinus communis]
13 Hb_002014_140 0.0697367649 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_006901_010 0.0719222028 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
15 Hb_107748_010 0.0753745473 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
16 Hb_000805_080 0.0761827596 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
17 Hb_004611_010 0.0772894413 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_005605_020 0.0785156546 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
19 Hb_001046_060 0.0788990438 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
20 Hb_005605_010 0.0814787368 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]

Gene co-expression network

sample Hb_185830_050 Hb_185830_050 Hb_008566_060 Hb_008566_060 Hb_185830_050--Hb_008566_060 Hb_001279_380 Hb_001279_380 Hb_185830_050--Hb_001279_380 Hb_027403_010 Hb_027403_010 Hb_185830_050--Hb_027403_010 Hb_000139_010 Hb_000139_010 Hb_185830_050--Hb_000139_010 Hb_000640_090 Hb_000640_090 Hb_185830_050--Hb_000640_090 Hb_002893_200 Hb_002893_200 Hb_185830_050--Hb_002893_200 Hb_008566_060--Hb_001279_380 Hb_008566_060--Hb_000139_010 Hb_008566_060--Hb_027403_010 Hb_008566_060--Hb_002893_200 Hb_097940_010 Hb_097940_010 Hb_008566_060--Hb_097940_010 Hb_001279_380--Hb_000139_010 Hb_001279_380--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_001279_380--Hb_007559_020 Hb_001279_380--Hb_027403_010 Hb_001279_380--Hb_002893_200 Hb_027403_010--Hb_000139_010 Hb_027403_010--Hb_097940_010 Hb_027403_010--Hb_007559_020 Hb_004611_010 Hb_004611_010 Hb_027403_010--Hb_004611_010 Hb_000139_010--Hb_097940_010 Hb_000139_010--Hb_007559_020 Hb_000139_010--Hb_002893_200 Hb_107748_010 Hb_107748_010 Hb_000640_090--Hb_107748_010 Hb_005605_020 Hb_005605_020 Hb_000640_090--Hb_005605_020 Hb_000640_090--Hb_002893_200 Hb_001046_060 Hb_001046_060 Hb_000640_090--Hb_001046_060 Hb_000640_090--Hb_008566_060 Hb_003337_080 Hb_003337_080 Hb_000640_090--Hb_003337_080 Hb_002014_140 Hb_002014_140 Hb_002893_200--Hb_002014_140 Hb_002893_200--Hb_107748_010 Hb_006901_010 Hb_006901_010 Hb_002893_200--Hb_006901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00776131 0.0588433 14.1808 1.24434 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0176149 0.0138609 0 0.00550411 31.9399

CAGE analysis