Hb_006901_010

Information

Type -
Description -
Location Contig6901: 10310-10906
Sequence    

Annotation

kegg
ID rcu:RCOM_1681690
description Blue copper protein precursor, putative
nr
ID KDP25566.1
description hypothetical protein JCGZ_20722 [Jatropha curcas]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JNK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20722 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006901_010 0.0 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
2 Hb_002014_140 0.0176389756 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_000482_170 0.0370190182 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
4 Hb_000083_020 0.0408563632 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_002893_200 0.0465916929 - - aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_005605_010 0.0486045207 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
7 Hb_000334_290 0.052676518 - - monovalent cation:proton antiporter, putative [Ricinus communis]
8 Hb_001279_380 0.0531154263 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
9 Hb_008566_060 0.0627750829 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000640_090 0.063200622 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
11 Hb_004525_010 0.064919192 - - late embryogenesis abundant, putative [Ricinus communis]
12 Hb_000139_010 0.0654386925 - - -
13 Hb_000985_150 0.0667721767 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
14 Hb_001823_010 0.0691013501 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
15 Hb_097940_010 0.0699517989 - - pollen protein Ole E I-like protein [Medicago truncatula]
16 Hb_001433_080 0.0709127524 - - Pectinesterase precursor, putative [Ricinus communis]
17 Hb_004837_230 0.0716079504 - - unknown [Populus trichocarpa]
18 Hb_082402_020 0.0718760415 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
19 Hb_185830_050 0.0719222028 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
20 Hb_005245_110 0.0736901442 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]

Gene co-expression network

sample Hb_006901_010 Hb_006901_010 Hb_002014_140 Hb_002014_140 Hb_006901_010--Hb_002014_140 Hb_000482_170 Hb_000482_170 Hb_006901_010--Hb_000482_170 Hb_000083_020 Hb_000083_020 Hb_006901_010--Hb_000083_020 Hb_002893_200 Hb_002893_200 Hb_006901_010--Hb_002893_200 Hb_005605_010 Hb_005605_010 Hb_006901_010--Hb_005605_010 Hb_000334_290 Hb_000334_290 Hb_006901_010--Hb_000334_290 Hb_002014_140--Hb_002893_200 Hb_001279_380 Hb_001279_380 Hb_002014_140--Hb_001279_380 Hb_002014_140--Hb_000334_290 Hb_000139_010 Hb_000139_010 Hb_002014_140--Hb_000139_010 Hb_002014_140--Hb_000482_170 Hb_000482_170--Hb_005605_010 Hb_000482_170--Hb_000083_020 Hb_005245_110 Hb_005245_110 Hb_000482_170--Hb_005245_110 Hb_001823_010 Hb_001823_010 Hb_000482_170--Hb_001823_010 Hb_000083_020--Hb_005605_010 Hb_000083_020--Hb_001823_010 Hb_000083_020--Hb_005245_110 Hb_000083_020--Hb_002014_140 Hb_002893_200--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_002893_200--Hb_008566_060 Hb_000640_090 Hb_000640_090 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010 Hb_005605_010--Hb_005245_110 Hb_004837_230 Hb_004837_230 Hb_005605_010--Hb_004837_230 Hb_003921_010 Hb_003921_010 Hb_005605_010--Hb_003921_010 Hb_000985_150 Hb_000985_150 Hb_000334_290--Hb_000985_150 Hb_000334_290--Hb_002893_200 Hb_004525_010 Hb_004525_010 Hb_000334_290--Hb_004525_010 Hb_082402_020 Hb_082402_020 Hb_000334_290--Hb_082402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.543583 0.0717608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.966399

CAGE analysis