Hb_000482_170

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig482: 240457-241769
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24560g
description POPTRDRAFT_653902; hypothetical protein
nr
ID AGU42761.1
description GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
swissprot
ID Q9SZI6
description Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=3 SV=1
trembl
ID W8CX59
description GATA nirate-inducible carbon-metabolism involved protein OS=Populus nigra x Populus x canadensis GN=GNC PE=2 SV=1
Gene Ontology
ID GO:0005488
description gata transcription factor 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44788: 240536-240679 , PASA_asmbl_44789: 240684-240976 , PASA_asmbl_44790: 241013-241972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_170 0.0 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
2 Hb_006901_010 0.0370190182 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
3 Hb_005605_010 0.0411651244 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
4 Hb_000083_020 0.0422232984 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_002014_140 0.053228059 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
6 Hb_005245_110 0.053664045 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
7 Hb_001823_010 0.0578644468 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
8 Hb_000985_150 0.0586379118 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
9 Hb_099182_010 0.0607319623 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
10 Hb_004837_230 0.0607698478 - - unknown [Populus trichocarpa]
11 Hb_000334_290 0.0632939266 - - monovalent cation:proton antiporter, putative [Ricinus communis]
12 Hb_000191_090 0.0659771428 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
13 Hb_008484_080 0.068880428 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
14 Hb_004525_010 0.0726823972 - - late embryogenesis abundant, putative [Ricinus communis]
15 Hb_002893_200 0.0756997677 - - aldehyde dehydrogenase, putative [Ricinus communis]
16 Hb_003921_010 0.0758704338 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000003_490 0.0772739574 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
18 Hb_001433_080 0.0806618443 - - Pectinesterase precursor, putative [Ricinus communis]
19 Hb_007101_120 0.0810823408 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
20 Hb_006665_020 0.0825882606 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000482_170 Hb_000482_170 Hb_006901_010 Hb_006901_010 Hb_000482_170--Hb_006901_010 Hb_005605_010 Hb_005605_010 Hb_000482_170--Hb_005605_010 Hb_000083_020 Hb_000083_020 Hb_000482_170--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_000482_170--Hb_002014_140 Hb_005245_110 Hb_005245_110 Hb_000482_170--Hb_005245_110 Hb_001823_010 Hb_001823_010 Hb_000482_170--Hb_001823_010 Hb_006901_010--Hb_002014_140 Hb_006901_010--Hb_000083_020 Hb_002893_200 Hb_002893_200 Hb_006901_010--Hb_002893_200 Hb_006901_010--Hb_005605_010 Hb_000334_290 Hb_000334_290 Hb_006901_010--Hb_000334_290 Hb_005605_010--Hb_005245_110 Hb_005605_010--Hb_000083_020 Hb_004837_230 Hb_004837_230 Hb_005605_010--Hb_004837_230 Hb_003921_010 Hb_003921_010 Hb_005605_010--Hb_003921_010 Hb_000083_020--Hb_001823_010 Hb_000083_020--Hb_005245_110 Hb_000083_020--Hb_002014_140 Hb_002014_140--Hb_002893_200 Hb_001279_380 Hb_001279_380 Hb_002014_140--Hb_001279_380 Hb_002014_140--Hb_000334_290 Hb_000139_010 Hb_000139_010 Hb_002014_140--Hb_000139_010 Hb_005245_110--Hb_003921_010 Hb_005245_110--Hb_004837_230 Hb_005245_110--Hb_001823_010 Hb_001736_010 Hb_001736_010 Hb_001823_010--Hb_001736_010 Hb_000003_490 Hb_000003_490 Hb_001823_010--Hb_000003_490 Hb_001823_010--Hb_005605_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0172354 97.0957 11.0621 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 144.073

CAGE analysis