Hb_001736_010

Information

Type -
Description -
Location Contig1736: 8696-9214
Sequence    

Annotation

kegg
ID rcu:RCOM_0318910
description ring finger protein, putative
nr
ID XP_002531843.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q9FLC6
description RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1
trembl
ID B9T0S4
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0318910 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001736_010 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_000313_130 0.0414478287 - - zinc finger protein, putative [Ricinus communis]
3 Hb_001823_010 0.0550910705 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
4 Hb_003685_020 0.0583665677 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
5 Hb_034168_020 0.0585397945 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
6 Hb_001281_030 0.0587060543 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
7 Hb_000337_020 0.0589460235 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
8 Hb_118410_020 0.0591683194 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
9 Hb_000313_160 0.06019427 - - BnaC02g20570D [Brassica napus]
10 Hb_001946_230 0.0607773099 - - -
11 Hb_061183_010 0.0632966321 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
12 Hb_000039_140 0.0677676336 - - nuclease, putative [Ricinus communis]
13 Hb_007317_040 0.0703198512 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
14 Hb_000185_110 0.0744183489 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
15 Hb_029552_010 0.0761423727 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
16 Hb_000083_020 0.0800934788 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_003020_320 0.0822385117 - - -
18 Hb_019449_010 0.0837530072 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000192_100 0.0840651103 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_054127_030 0.0885214142 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]

Gene co-expression network

sample Hb_001736_010 Hb_001736_010 Hb_000313_130 Hb_000313_130 Hb_001736_010--Hb_000313_130 Hb_001823_010 Hb_001823_010 Hb_001736_010--Hb_001823_010 Hb_003685_020 Hb_003685_020 Hb_001736_010--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_001736_010--Hb_034168_020 Hb_001281_030 Hb_001281_030 Hb_001736_010--Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_001736_010--Hb_000337_020 Hb_007317_040 Hb_007317_040 Hb_000313_130--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000313_130--Hb_000185_110 Hb_000039_140 Hb_000039_140 Hb_000313_130--Hb_000039_140 Hb_029552_010 Hb_029552_010 Hb_000313_130--Hb_029552_010 Hb_019449_010 Hb_019449_010 Hb_000313_130--Hb_019449_010 Hb_000083_020 Hb_000083_020 Hb_001823_010--Hb_000083_020 Hb_000482_170 Hb_000482_170 Hb_001823_010--Hb_000482_170 Hb_005245_110 Hb_005245_110 Hb_001823_010--Hb_005245_110 Hb_000003_490 Hb_000003_490 Hb_001823_010--Hb_000003_490 Hb_005605_010 Hb_005605_010 Hb_001823_010--Hb_005605_010 Hb_003685_020--Hb_034168_020 Hb_118410_020 Hb_118410_020 Hb_003685_020--Hb_118410_020 Hb_003685_020--Hb_001281_030 Hb_003685_020--Hb_000337_020 Hb_000313_160 Hb_000313_160 Hb_003685_020--Hb_000313_160 Hb_001946_230 Hb_001946_230 Hb_003685_020--Hb_001946_230 Hb_034168_020--Hb_118410_020 Hb_034168_020--Hb_001281_030 Hb_034168_020--Hb_000337_020 Hb_034168_020--Hb_000313_160 Hb_034168_020--Hb_001946_230 Hb_001281_030--Hb_000337_020 Hb_001281_030--Hb_000313_160 Hb_001281_030--Hb_001946_230 Hb_001281_030--Hb_118410_020 Hb_000337_020--Hb_000313_160 Hb_000337_020--Hb_001946_230 Hb_061183_010 Hb_061183_010 Hb_000337_020--Hb_061183_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.68526 0.0673823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.17234

CAGE analysis