Hb_019449_010

Information

Type -
Description -
Location Contig19449: 1414-2205
Sequence    

Annotation

kegg
ID rcu:RCOM_0605720
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002529807.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID B9SUY8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0605720 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019449_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000192_100 0.0004356112 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
3 Hb_054127_030 0.0065068993 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
4 Hb_081843_010 0.007617337 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
5 Hb_009026_010 0.0110948234 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_029552_010 0.0111936704 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
7 Hb_052135_050 0.0117698825 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
8 Hb_000185_110 0.0139288507 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
9 Hb_000028_290 0.0150368193 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
10 Hb_001024_010 0.0151151873 - - phosphofructokinase [Hevea brasiliensis]
11 Hb_126077_010 0.0162711715 - - -
12 Hb_007317_040 0.0208849756 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
13 Hb_000039_140 0.0256727867 - - nuclease, putative [Ricinus communis]
14 Hb_163122_010 0.0422118408 - - protein binding protein, putative [Ricinus communis]
15 Hb_118410_020 0.0502956822 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
16 Hb_034168_020 0.0552987634 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
17 Hb_002928_050 0.0554939014 - - -
18 Hb_003685_020 0.0582647614 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
19 Hb_002081_240 0.0590460553 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_018710_050 0.0599066427 - - -

Gene co-expression network

sample Hb_019449_010 Hb_019449_010 Hb_000192_100 Hb_000192_100 Hb_019449_010--Hb_000192_100 Hb_054127_030 Hb_054127_030 Hb_019449_010--Hb_054127_030 Hb_081843_010 Hb_081843_010 Hb_019449_010--Hb_081843_010 Hb_009026_010 Hb_009026_010 Hb_019449_010--Hb_009026_010 Hb_029552_010 Hb_029552_010 Hb_019449_010--Hb_029552_010 Hb_052135_050 Hb_052135_050 Hb_019449_010--Hb_052135_050 Hb_000192_100--Hb_054127_030 Hb_000192_100--Hb_081843_010 Hb_000192_100--Hb_009026_010 Hb_000192_100--Hb_052135_050 Hb_000192_100--Hb_029552_010 Hb_054127_030--Hb_081843_010 Hb_054127_030--Hb_009026_010 Hb_054127_030--Hb_052135_050 Hb_000028_290 Hb_000028_290 Hb_054127_030--Hb_000028_290 Hb_081843_010--Hb_009026_010 Hb_081843_010--Hb_052135_050 Hb_081843_010--Hb_000028_290 Hb_001024_010 Hb_001024_010 Hb_081843_010--Hb_001024_010 Hb_009026_010--Hb_052135_050 Hb_009026_010--Hb_000028_290 Hb_009026_010--Hb_001024_010 Hb_126077_010 Hb_126077_010 Hb_009026_010--Hb_126077_010 Hb_000185_110 Hb_000185_110 Hb_029552_010--Hb_000185_110 Hb_007317_040 Hb_007317_040 Hb_029552_010--Hb_007317_040 Hb_000039_140 Hb_000039_140 Hb_029552_010--Hb_000039_140 Hb_029552_010--Hb_054127_030 Hb_052135_050--Hb_000028_290 Hb_052135_050--Hb_001024_010 Hb_052135_050--Hb_126077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0505345 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.11422

CAGE analysis