Hb_000185_110

Information

Type -
Description -
Location Contig185: 147958-154958
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09200g
description POPTRDRAFT_776125; transcription factor jumonji domain-containing family protein
nr
ID KDP31061.1
description hypothetical protein JCGZ_11437 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11437 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18111: 153936-154440 , PASA_asmbl_18112: 153843-158006 , PASA_asmbl_18113: 153967-157368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_110 0.0 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
2 Hb_029552_010 0.0027353745 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
3 Hb_007317_040 0.0069570367 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
4 Hb_000039_140 0.0117458188 - - nuclease, putative [Ricinus communis]
5 Hb_019449_010 0.0139288507 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000192_100 0.0143644218 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
7 Hb_054127_030 0.0204348899 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
8 Hb_081843_010 0.0215451249 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
9 Hb_009026_010 0.025021869 - - Squalene monooxygenase, putative [Ricinus communis]
10 Hb_052135_050 0.0256967651 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
11 Hb_000028_290 0.0289628255 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
12 Hb_001024_010 0.0290411707 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_126077_010 0.0301968084 - - -
14 Hb_118410_020 0.036377966 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
15 Hb_034168_020 0.0413837689 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
16 Hb_003685_020 0.0443515106 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
17 Hb_001281_030 0.0528845071 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
18 Hb_000337_020 0.0547599733 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
19 Hb_163122_010 0.0561247171 - - protein binding protein, putative [Ricinus communis]
20 Hb_000313_160 0.0611411657 - - BnaC02g20570D [Brassica napus]

Gene co-expression network

sample Hb_000185_110 Hb_000185_110 Hb_029552_010 Hb_029552_010 Hb_000185_110--Hb_029552_010 Hb_007317_040 Hb_007317_040 Hb_000185_110--Hb_007317_040 Hb_000039_140 Hb_000039_140 Hb_000185_110--Hb_000039_140 Hb_019449_010 Hb_019449_010 Hb_000185_110--Hb_019449_010 Hb_000192_100 Hb_000192_100 Hb_000185_110--Hb_000192_100 Hb_054127_030 Hb_054127_030 Hb_000185_110--Hb_054127_030 Hb_029552_010--Hb_007317_040 Hb_029552_010--Hb_019449_010 Hb_029552_010--Hb_000192_100 Hb_029552_010--Hb_000039_140 Hb_029552_010--Hb_054127_030 Hb_007317_040--Hb_000039_140 Hb_007317_040--Hb_019449_010 Hb_007317_040--Hb_000192_100 Hb_007317_040--Hb_054127_030 Hb_118410_020 Hb_118410_020 Hb_000039_140--Hb_118410_020 Hb_000039_140--Hb_019449_010 Hb_000039_140--Hb_000192_100 Hb_019449_010--Hb_000192_100 Hb_019449_010--Hb_054127_030 Hb_081843_010 Hb_081843_010 Hb_019449_010--Hb_081843_010 Hb_009026_010 Hb_009026_010 Hb_019449_010--Hb_009026_010 Hb_052135_050 Hb_052135_050 Hb_019449_010--Hb_052135_050 Hb_000192_100--Hb_054127_030 Hb_000192_100--Hb_081843_010 Hb_000192_100--Hb_009026_010 Hb_000192_100--Hb_052135_050 Hb_054127_030--Hb_081843_010 Hb_054127_030--Hb_009026_010 Hb_054127_030--Hb_052135_050 Hb_000028_290 Hb_000028_290 Hb_054127_030--Hb_000028_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0902683 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.190109

CAGE analysis