Hb_054127_030

Information

Type -
Description -
Location Contig54127: 23045-24318
Sequence    

Annotation

kegg
ID rcu:RCOM_0339650
description Nodulation receptor kinase precursor, putative (EC:2.7.11.30)
nr
ID XP_012090752.1
description PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T5Y2
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_0339650 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054127_030 0.0 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
2 Hb_081843_010 0.001110464 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
3 Hb_009026_010 0.0045880824 - - Squalene monooxygenase, putative [Ricinus communis]
4 Hb_052135_050 0.0052631761 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
5 Hb_000192_100 0.0060712962 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_019449_010 0.0065068993 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000028_290 0.0085303209 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
8 Hb_001024_010 0.0086086947 - - phosphofructokinase [Hevea brasiliensis]
9 Hb_126077_010 0.0097647694 - - -
10 Hb_029552_010 0.0176999691 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
11 Hb_000185_110 0.0204348899 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
12 Hb_007317_040 0.0273901597 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
13 Hb_000039_140 0.0321772224 - - nuclease, putative [Ricinus communis]
14 Hb_163122_010 0.0357098097 - - protein binding protein, putative [Ricinus communis]
15 Hb_002928_050 0.0489959299 - - -
16 Hb_002081_240 0.05254939 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
17 Hb_018710_050 0.0534103082 - - -
18 Hb_008013_030 0.0567130667 - - -
19 Hb_118410_020 0.0567942869 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
20 Hb_034168_020 0.0617957921 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_054127_030 Hb_054127_030 Hb_081843_010 Hb_081843_010 Hb_054127_030--Hb_081843_010 Hb_009026_010 Hb_009026_010 Hb_054127_030--Hb_009026_010 Hb_052135_050 Hb_052135_050 Hb_054127_030--Hb_052135_050 Hb_000192_100 Hb_000192_100 Hb_054127_030--Hb_000192_100 Hb_019449_010 Hb_019449_010 Hb_054127_030--Hb_019449_010 Hb_000028_290 Hb_000028_290 Hb_054127_030--Hb_000028_290 Hb_081843_010--Hb_009026_010 Hb_081843_010--Hb_052135_050 Hb_081843_010--Hb_000192_100 Hb_081843_010--Hb_000028_290 Hb_001024_010 Hb_001024_010 Hb_081843_010--Hb_001024_010 Hb_009026_010--Hb_052135_050 Hb_009026_010--Hb_000028_290 Hb_009026_010--Hb_001024_010 Hb_126077_010 Hb_126077_010 Hb_009026_010--Hb_126077_010 Hb_052135_050--Hb_000028_290 Hb_052135_050--Hb_001024_010 Hb_052135_050--Hb_126077_010 Hb_000192_100--Hb_019449_010 Hb_000192_100--Hb_009026_010 Hb_000192_100--Hb_052135_050 Hb_029552_010 Hb_029552_010 Hb_000192_100--Hb_029552_010 Hb_019449_010--Hb_081843_010 Hb_019449_010--Hb_009026_010 Hb_019449_010--Hb_029552_010 Hb_019449_010--Hb_052135_050 Hb_000028_290--Hb_001024_010 Hb_000028_290--Hb_126077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0327415 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0765122

CAGE analysis