Hb_126077_010

Information

Type -
Description -
Location Contig126077: 32-1754
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0E0I156
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07949: 1090-1352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126077_010 0.0 - - -
2 Hb_001024_010 0.0011561223 - - phosphofructokinase [Hevea brasiliensis]
3 Hb_000028_290 0.0012344989 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
4 Hb_052135_050 0.0045017062 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
5 Hb_009026_010 0.0051768 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_081843_010 0.008654351 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
7 Hb_054127_030 0.0097647694 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
8 Hb_000192_100 0.0158356138 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_019449_010 0.0162711715 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_163122_010 0.025949624 - - protein binding protein, putative [Ricinus communis]
11 Hb_029552_010 0.0274624856 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
12 Hb_000185_110 0.0301968084 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
13 Hb_007317_040 0.0371502657 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
14 Hb_002928_050 0.039240834 - - -
15 Hb_000039_140 0.0419358414 - - nuclease, putative [Ricinus communis]
16 Hb_002081_240 0.0427959878 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
17 Hb_018710_050 0.0436573379 - - -
18 Hb_008013_030 0.0469618325 - - -
19 Hb_162002_010 0.063197535 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
20 Hb_000138_030 0.0650181332 - - -

Gene co-expression network

sample Hb_126077_010 Hb_126077_010 Hb_001024_010 Hb_001024_010 Hb_126077_010--Hb_001024_010 Hb_000028_290 Hb_000028_290 Hb_126077_010--Hb_000028_290 Hb_052135_050 Hb_052135_050 Hb_126077_010--Hb_052135_050 Hb_009026_010 Hb_009026_010 Hb_126077_010--Hb_009026_010 Hb_081843_010 Hb_081843_010 Hb_126077_010--Hb_081843_010 Hb_054127_030 Hb_054127_030 Hb_126077_010--Hb_054127_030 Hb_001024_010--Hb_000028_290 Hb_001024_010--Hb_052135_050 Hb_001024_010--Hb_009026_010 Hb_001024_010--Hb_081843_010 Hb_001024_010--Hb_054127_030 Hb_000028_290--Hb_052135_050 Hb_000028_290--Hb_009026_010 Hb_000028_290--Hb_081843_010 Hb_000028_290--Hb_054127_030 Hb_052135_050--Hb_009026_010 Hb_052135_050--Hb_081843_010 Hb_052135_050--Hb_054127_030 Hb_009026_010--Hb_081843_010 Hb_009026_010--Hb_054127_030 Hb_081843_010--Hb_054127_030 Hb_000192_100 Hb_000192_100 Hb_081843_010--Hb_000192_100 Hb_054127_030--Hb_000192_100 Hb_019449_010 Hb_019449_010 Hb_054127_030--Hb_019449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0336886 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0827992

CAGE analysis