Hb_000028_290

Information

Type -
Description -
Location Contig28: 283023-287663
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05040g
description hypothetical protein
nr
ID KDP24826.1
description hypothetical protein JCGZ_25310 [Jatropha curcas]
swissprot
ID Q9M7J9
description Potassium transporter 8 OS=Arabidopsis thaliana GN=POT8 PE=2 SV=2
trembl
ID A0A067JLG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25310 PE=4 SV=1
Gene Ontology
ID GO:0006811
description potassium transporter 8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_290 0.0 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
2 Hb_001024_010 7.83767e-05 - - phosphofructokinase [Hevea brasiliensis]
3 Hb_126077_010 0.0012344989 - - -
4 Hb_052135_050 0.0032672163 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
5 Hb_009026_010 0.0039423135 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_081843_010 0.007419891 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
7 Hb_054127_030 0.0085303209 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
8 Hb_000192_100 0.0146012537 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_019449_010 0.0150368193 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_029552_010 0.0262284131 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
11 Hb_163122_010 0.0271836769 - - protein binding protein, putative [Ricinus communis]
12 Hb_000185_110 0.0289628255 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
13 Hb_007317_040 0.0359165476 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
14 Hb_002928_050 0.0404743113 - - -
15 Hb_000039_140 0.0407023358 - - nuclease, putative [Ricinus communis]
16 Hb_002081_240 0.0440292691 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
17 Hb_018710_050 0.0448905689 - - -
18 Hb_008013_030 0.0481948607 - - -
19 Hb_162002_010 0.0644293302 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
20 Hb_118410_020 0.0653102584 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]

Gene co-expression network

sample Hb_000028_290 Hb_000028_290 Hb_001024_010 Hb_001024_010 Hb_000028_290--Hb_001024_010 Hb_126077_010 Hb_126077_010 Hb_000028_290--Hb_126077_010 Hb_052135_050 Hb_052135_050 Hb_000028_290--Hb_052135_050 Hb_009026_010 Hb_009026_010 Hb_000028_290--Hb_009026_010 Hb_081843_010 Hb_081843_010 Hb_000028_290--Hb_081843_010 Hb_054127_030 Hb_054127_030 Hb_000028_290--Hb_054127_030 Hb_001024_010--Hb_126077_010 Hb_001024_010--Hb_052135_050 Hb_001024_010--Hb_009026_010 Hb_001024_010--Hb_081843_010 Hb_001024_010--Hb_054127_030 Hb_126077_010--Hb_052135_050 Hb_126077_010--Hb_009026_010 Hb_126077_010--Hb_081843_010 Hb_126077_010--Hb_054127_030 Hb_052135_050--Hb_009026_010 Hb_052135_050--Hb_081843_010 Hb_052135_050--Hb_054127_030 Hb_009026_010--Hb_081843_010 Hb_009026_010--Hb_054127_030 Hb_081843_010--Hb_054127_030 Hb_000192_100 Hb_000192_100 Hb_081843_010--Hb_000192_100 Hb_054127_030--Hb_000192_100 Hb_019449_010 Hb_019449_010 Hb_054127_030--Hb_019449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.02304 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0562656

CAGE analysis