Hb_081843_010

Information

Type -
Description -
Location Contig81843: 33-725
Sequence    

Annotation

kegg
ID vvi:104880938
description uncharacterized LOC104880938
nr
ID XP_010657525.1
description PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6H3U6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081843_010 0.0 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
2 Hb_054127_030 0.001110464 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
3 Hb_009026_010 0.003477627 - - Squalene monooxygenase, putative [Ricinus communis]
4 Hb_052135_050 0.0041527238 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
5 Hb_000192_100 0.0071817371 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_000028_290 0.007419891 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
7 Hb_001024_010 0.0074982655 - - phosphofructokinase [Hevea brasiliensis]
8 Hb_019449_010 0.007617337 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_126077_010 0.008654351 - - -
10 Hb_029552_010 0.0188102594 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
11 Hb_000185_110 0.0215451249 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
12 Hb_007317_040 0.0285002209 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
13 Hb_000039_140 0.0332871366 - - nuclease, putative [Ricinus communis]
14 Hb_163122_010 0.0346000332 - - protein binding protein, putative [Ricinus communis]
15 Hb_002928_050 0.0478867935 - - -
16 Hb_002081_240 0.0514404625 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
17 Hb_018710_050 0.0523014337 - - -
18 Hb_008013_030 0.0556044048 - - -
19 Hb_118410_020 0.057903108 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
20 Hb_034168_020 0.0629043244 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_081843_010 Hb_081843_010 Hb_054127_030 Hb_054127_030 Hb_081843_010--Hb_054127_030 Hb_009026_010 Hb_009026_010 Hb_081843_010--Hb_009026_010 Hb_052135_050 Hb_052135_050 Hb_081843_010--Hb_052135_050 Hb_000192_100 Hb_000192_100 Hb_081843_010--Hb_000192_100 Hb_000028_290 Hb_000028_290 Hb_081843_010--Hb_000028_290 Hb_001024_010 Hb_001024_010 Hb_081843_010--Hb_001024_010 Hb_054127_030--Hb_009026_010 Hb_054127_030--Hb_052135_050 Hb_054127_030--Hb_000192_100 Hb_019449_010 Hb_019449_010 Hb_054127_030--Hb_019449_010 Hb_054127_030--Hb_000028_290 Hb_009026_010--Hb_052135_050 Hb_009026_010--Hb_000028_290 Hb_009026_010--Hb_001024_010 Hb_126077_010 Hb_126077_010 Hb_009026_010--Hb_126077_010 Hb_052135_050--Hb_000028_290 Hb_052135_050--Hb_001024_010 Hb_052135_050--Hb_126077_010 Hb_000192_100--Hb_019449_010 Hb_000192_100--Hb_009026_010 Hb_000192_100--Hb_052135_050 Hb_029552_010 Hb_029552_010 Hb_000192_100--Hb_029552_010 Hb_000028_290--Hb_001024_010 Hb_000028_290--Hb_126077_010 Hb_001024_010--Hb_126077_010 Hb_001024_010--Hb_054127_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0586127 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.137754

CAGE analysis