Hb_000039_140

Information

Type -
Description -
Location Contig39: 184237-184703
Sequence    

Annotation

kegg
ID rcu:RCOM_1096450
description nuclease, putative
nr
ID XP_002524702.1
description nuclease, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFD3
description Nuclease, putative OS=Ricinus communis GN=RCOM_1096450 PE=4 SV=1
Gene Ontology
ID GO:0003676
description at4g21420p-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_140 0.0 - - nuclease, putative [Ricinus communis]
2 Hb_007317_040 0.0047889537 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
3 Hb_000185_110 0.0117458188 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
4 Hb_029552_010 0.0144809872 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
5 Hb_118410_020 0.0246366311 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
6 Hb_019449_010 0.0256727867 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000192_100 0.026108265 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
8 Hb_034168_020 0.0296440584 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
9 Hb_054127_030 0.0321772224 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
10 Hb_003685_020 0.0326128734 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
11 Hb_081843_010 0.0332871366 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
12 Hb_009026_010 0.0367627863 - - Squalene monooxygenase, putative [Ricinus communis]
13 Hb_052135_050 0.0374374541 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
14 Hb_000028_290 0.0407023358 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
15 Hb_001024_010 0.0407806512 - - phosphofructokinase [Hevea brasiliensis]
16 Hb_001281_030 0.0411494069 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
17 Hb_126077_010 0.0419358414 - - -
18 Hb_000337_020 0.0430257391 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
19 Hb_000313_160 0.0494101139 - - BnaC02g20570D [Brassica napus]
20 Hb_001946_230 0.0516226031 - - -

Gene co-expression network

sample Hb_000039_140 Hb_000039_140 Hb_007317_040 Hb_007317_040 Hb_000039_140--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000039_140--Hb_000185_110 Hb_029552_010 Hb_029552_010 Hb_000039_140--Hb_029552_010 Hb_118410_020 Hb_118410_020 Hb_000039_140--Hb_118410_020 Hb_019449_010 Hb_019449_010 Hb_000039_140--Hb_019449_010 Hb_000192_100 Hb_000192_100 Hb_000039_140--Hb_000192_100 Hb_007317_040--Hb_000185_110 Hb_007317_040--Hb_029552_010 Hb_007317_040--Hb_019449_010 Hb_007317_040--Hb_000192_100 Hb_054127_030 Hb_054127_030 Hb_007317_040--Hb_054127_030 Hb_000185_110--Hb_029552_010 Hb_000185_110--Hb_019449_010 Hb_000185_110--Hb_000192_100 Hb_000185_110--Hb_054127_030 Hb_029552_010--Hb_019449_010 Hb_029552_010--Hb_000192_100 Hb_029552_010--Hb_054127_030 Hb_034168_020 Hb_034168_020 Hb_118410_020--Hb_034168_020 Hb_003685_020 Hb_003685_020 Hb_118410_020--Hb_003685_020 Hb_001281_030 Hb_001281_030 Hb_118410_020--Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_118410_020--Hb_000337_020 Hb_000313_160 Hb_000313_160 Hb_118410_020--Hb_000313_160 Hb_019449_010--Hb_000192_100 Hb_019449_010--Hb_054127_030 Hb_081843_010 Hb_081843_010 Hb_019449_010--Hb_081843_010 Hb_009026_010 Hb_009026_010 Hb_019449_010--Hb_009026_010 Hb_052135_050 Hb_052135_050 Hb_019449_010--Hb_052135_050 Hb_000192_100--Hb_054127_030 Hb_000192_100--Hb_081843_010 Hb_000192_100--Hb_009026_010 Hb_000192_100--Hb_052135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.125629 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.249447

CAGE analysis